Colossoma macropomum (tambaqui): 118814836
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Entry
118814836 CDS
T09004
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118814836
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmao03019
]
118814836
Messenger RNA biogenesis [BR:
cmao03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
118814836
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fip1
TSX
Motif
Other DBs
NCBI-GeneID:
118814836
NCBI-ProteinID:
XP_036436534
LinkDB
All DBs
Position
Unknown
AA seq
529 aa
AA seq
DB search
MATAAAESEQVEDEEHWLYGDENSKNQAVNDETRETEPAPESSNSTEEKNDTEQAAKSAE
DEEEEDSDSDDEDDVKVTIGNIKTGAPAYMGSGMNLSIKPVRGYGVAATNKLQCKGVDME
SLSGFNGLHAVEAEADTYEDKPWRKPGADLSDYFNYGFNEETWKAYCEKQRRLQLGLDPC
LPPSFENKITVQQGRTVSLEKEAENSTVKLDFKTDFSTQAITASSRLKAGPPPNRKMGGT
IDVIGGQTGAIRRVEGRRREIPEQNPIQVLGDHGNKTQPLTPPTAPPPLPPIGVPPPHFL
HRPPPVSGMPPPMQPPGIPPPALPGMFPPPLVPPPNLMMPPVNSRCPSSGYANRAPPPFG
YSSGEPNFISYPPVSSSHMQWGGVMEKSAGGGGGGGGGGHWEHSRREREREREREMDRER
ETERRERTPTTNEYIEEERYRYYARESEREYERFHHPRASSRGREEHTGRERRHREKEES
GKHKSSKRKQHDDDGDGHRRHKHKKNKRSKEERAAEDAGGPGDEHEHKD
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atggccactgcagccgcggagtccgagcaggtcgaggatgaagagcactggctctacggg
gatgaaaactccaagaatcaggctgtaaacgatgaaacgagagagacagaacctgctcct
gagagcagcaacagcacggaggagaagaacgacacagagcaggcagctaaaagtgcagag
gatgaggaagaggaggacagtgacagcgatgatgaagatgatgtcaaggtcaccatcggc
aacatcaagacgggagctccagcttacatggggtctggaatgaacctcagcattaaacca
gtgcgaggatatggagtggcggctacaaataaacttcagtgtaaaggtgtggacatggag
tcgctgagcggctttaatggactccatgcggttgaggcggaggctgatacgtatgaagac
aaaccctggaggaagccaggtgctgacctgtcggactattttaactacggtttcaatgaa
gagacgtggaaggcgtactgtgaaaagcagagaaggcttcagctcggacttgacccctgc
cttcctcccagttttgagaacaaaatcacagtccagcaaggtagaacggtcagtttggag
aaggaggctgaaaactctacggtcaaactggatttcaagactgacttttctacgcaggcc
ataacggcgtccagcaggctgaaagctggacctccacccaacaggaaaatgggcgggacg
attgatgtgattggtggacagacgggagccattcgcagagtggagggccgaagaagagag
atcccagagcagaatcctattcaggttctgggtgatcatggcaacaagacccagcccctg
actccacccacagctccgcctcccctcccccctataggagttccaccaccacactttctg
catcgcccacctccggtctccggtatgcccccacccatgcagcctccaggtattcctcca
cctgcccttccaggtatgttccctccgcctctggtccctccaccaaacctaatgatgccg
cctgtcaacagtcgatgtccgtcctcaggctatgctaacagagcgccccctccttttgga
tacagcagtggagagccgaacttcatcagctatcctccggtctcctcctcacatatgcag
tggggtggagtgatggagaagagcgcaggaggaggaggaggaggaggagggggtggacac
tgggagcactcccgacgagaacgagagagagagagagaaagagagatggacagagaaaga
gagacagaaaggagggagcgaacgcccaccacaaatgaatatattgaggaggagcgctat
cgctattacgctcgcgagagcgagagagagtacgaacgcttccatcaccctcgcgcgagc
agccgggggagagaggagcacactgggagagagagacgacacagagagaaggaagagagc
ggaaaacacaagtcttccaaacgcaaacagcacgacgacgacggagacggccaccgcaga
cacaaacacaaaaagaacaaacgcagcaaagaagagagagcagcggaggacgcaggtgga
ccaggagacgaacacgaacacaaggactaa
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