Colossoma macropomum (tambaqui): 118815798
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Entry
118815798 CDS
T09004
Symbol
xrn2
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03008
Ribosome biogenesis in eukaryotes
cmao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
118815798 (xrn2)
09123 Folding, sorting and degradation
03018 RNA degradation
118815798 (xrn2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmao03021
]
118815798 (xrn2)
03019 Messenger RNA biogenesis [BR:
cmao03019
]
118815798 (xrn2)
03009 Ribosome biogenesis [BR:
cmao03009
]
118815798 (xrn2)
03016 Transfer RNA biogenesis [BR:
cmao03016
]
118815798 (xrn2)
Transcription machinery [BR:
cmao03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
118815798 (xrn2)
Messenger RNA biogenesis [BR:
cmao03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
118815798 (xrn2)
Ribosome biogenesis [BR:
cmao03009
]
Eukaryotic type
Pre-60S particles
RNases
118815798 (xrn2)
Transfer RNA biogenesis [BR:
cmao03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
118815798 (xrn2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
DJC28_CD
zf-CCHC_4
Motif
Other DBs
NCBI-GeneID:
118815798
NCBI-ProteinID:
XP_036438052
LinkDB
All DBs
Position
Unknown
AA seq
972 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVNCVEEKSKECNGVRIPVDTSKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKEAVELADEKQRMREEIFQRGGYLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYVAD
RLTNDPGWQNITVFLSDASVPGEGEHKIMDFIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPRPCALCGQIGHDIKDCQGVAREKRGEHDEFADTIPASEQE
FIFLRLSVLREYLERELTMASLPFPFNFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVSIYKDVVHKTGGYLTENGFVNLERVELIMQAVGVAEDNIFKKRKEDEENFKKRMKE
KKKRLKAEQGPAFLPGGQFAPQALGGRDRPLPVQNARHTAFDMRMQGNRYQQNKNAAESL
RATLRNGSKATAGPSDGMDNRGLKRKAEDSDSEPEPEDNVRLWEDGWKQRYYKNKFDVDE
TDEEFRKKVVKSYVEGLCWVLRYYYQGCASWKWYFPFHYAPFASDFKDIKDMFMDFEKGT
KPFKPLEQLMGVFPAASGNFLPTTWRALMTDPDSSIIDFYPDDFAIDLNGKKYAWQGVAL
LPFVDERRLRAALAKVYPDLTAEEVRRNSLGSDVFFVGKSHPLCDFIIELYRSESHEGTE
IPPELCHGIQGTLNLDEEPILPDKPVESPVPLLRDIPCSSAVGIKFKDPQYEEGHVFKAV
VLPGAKMPNKVLKPGDWHRSNSGPWKPQLGFNPNRQQVHLDQSAFRTLGHHINSHQQGSG
QYNQPRIGQHVGGQYSNAPPPSVYHQGNYRPPLRKDPPPFQHSMQHGFPRAPPPSHQQQY
PRPQRGGQGGHGWDRAMQAQGSAYQHNVQRGRGGQGSYHQHPPRRDDRRPQEGYNSGRGY
GLPPPTRRYNWS
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgcccgcgttttttcgctggctgagtcggaagtacccttctataattgtgaac
tgtgtggaagagaagtctaaggaatgcaatggagttcgaataccagttgacacatctaaa
cccaacccaaatgaggtggagttcgacaacttgtatttggacatgaatggaatcatccac
ccttgcacacatcctgaggacaaaccagcacccaaaaatgaagatgaaatgatggttgcc
atttttgagtacattgaccgactcttcaacattgttcgtccaagaagggttctttacatg
gcaattgatggagttgctcctcgtgccaaaatgaaccagcagaggtcaagacgatttcgt
gcctccaaagaagcagtggagctagcagatgaaaaacagcggatgagagaggaaattttt
cagaggggtgggtacctgccacccgaagaaataaaggagcgattcgacagcaattgcatc
actccaggcacagaattcatggacaacttggccaaatgcttgcggtattatgttgcagac
aggctgaccaatgatcctggatggcagaatatcacagtttttctgtccgatgctagtgtt
cctggagaaggagagcataagatcatggattttattaggaggcagagagctcaaccaaac
catgatccaaatactcatcactgtctctgtggtgctgatgctgatctgattatgttgggc
ctggccacacatgagcctaacttcaccatcatccgagaggaattcaaacccaacaagccc
agaccctgtgccctgtgtgggcaaatagggcacgacattaaagactgccagggagtggcc
agagagaagaggggagagcatgatgaatttgcagatacaatcccggcatctgaacaggag
tttatattccttcgcctgtctgttttgagagagtatctggagcgggagctgacgatggcc
agcctgccttttccctttaacttcgagaggagtgtggatgactgggtcttcatgtgcttc
tttgtgggaaatgattttctgccccatttaccctctttagaaatcagagagggtgccatt
gatcgactcgtgtccatttataaagatgttgtgcacaagactgggggttacctcacagaa
aacggctttgtcaacctggaacgagtggagctcataatgcaggctgtgggagttgctgaa
gataacatcttcaagaagcgcaaagaggatgaggaaaattttaaaaagaggatgaaggag
aagaagaaacgattgaaagcagaacagggcccagcatttctcccgggtggtcagtttgcc
ccccaagcactggggggccgagacagacctctacctgtgcagaacgcacgtcacaccgca
tttgacatgaggatgcaaggaaaccgttaccagcagaacaagaatgctgcagagtccttg
agagctacgttgagaaatgggagcaaggccactgcagggcctagcgatggcatggacaac
cgtggcctgaagaggaaagctgaagacagcgacagtgagccagagcctgaagataatgtc
agattgtgggaggatggctggaagcagcgctattacaaaaacaagtttgacgtggatgag
actgatgaagaatttcgcaagaaagtagtcaagtcatatgtggagggcctgtgttgggtt
cttagatactactaccagggctgtgcatcctggaagtggtactttccattccactatgca
ccgtttgcatctgacttcaaagacatcaaggacatgttcatggattttgaaaaagggact
aagccgttcaaacccctggaacaacttatgggagtgttccctgcagccagtgggaatttc
cttccaacaacatggagggcactgatgactgatcctgactcctctatcatagatttttat
cctgatgactttgctattgatttgaatgggaagaaatacgcctggcagggtgttgctttg
ttgccgtttgttgatgaacgcaggctgcgggcagccttggcaaaagtctaccctgattta
actgcagaggaagtcagaaggaatagtctgggcagtgatgtgttttttgtggggaagtca
caccccctgtgtgatttcatcatagaactctaccgttcagaatctcacgagggcacagag
attcctccagagctgtgccatggaatccaaggtacattaaatcttgatgaagagcctatt
ctaccagataaacctgtagaatctccagtcccattgttgagagatattccatgcagcagt
gcagtgggaatcaaattcaaggatccacagtatgaggaaggtcacgtgttcaaagccgtc
gtccttccaggggctaagatgcccaataaagtgttgaaacctggtgactggcataggtct
aatagcggaccatggaaacctcagctggggttcaacccgaaccgtcagcaggttcacttg
gaccagtctgccttcaggaccttaggccatcatataaacagccatcagcaaggaagtggt
cagtacaaccaaccacgtatcggccagcatgtgggtggtcagtatagcaatgccccgcct
cccagtgtatatcaccaaggaaactacagaccgcccctcagaaaagacccacccccattc
cagcattctatgcaacatggatttccaagagcgccgcccccctctcatcagcagcagtac
ccaaggcctcagcgtggtggtcagggtggccatggttgggaccgggcaatgcaggcacaa
ggctctgcctaccagcataacgtacagaggggtcgtggaggacaaggcagctaccaccag
catcctcctcgcagagacgaccgcagaccacaggaggggtacaactctgggagaggctat
ggcctgcctccaccgacaagacgctacaactggagctga
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integrated database retrieval system
