Colossoma macropomum (tambaqui): 118815885
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Entry
118815885 CDS
T09004
Symbol
cdc40
Name
(RefSeq) pre-mRNA-processing factor 17
KO
K12816
pre-mRNA-processing factor 17
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118815885 (cdc40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmao03041
]
118815885 (cdc40)
Spliceosome [BR:
cmao03041
]
Complex C
Other components
Step II factors
118815885 (cdc40)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WDR55
EIF3I
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WD40_RFWD3
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_DCAF4
Beta-prop_SPT8
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_NWD2_C
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
118815885
NCBI-ProteinID:
XP_036438191
LinkDB
All DBs
Position
Unknown
AA seq
578 aa
AA seq
DB search
MAAVVGSLVAYGSDSDSENETESNTNPEKVDPDAIAHLQPLKSGRAASLAVLNSAPEVAV
KEDVETGTHLDPSLKEVNYNPTYETMFAPEFGPVNPFRTQQMAAPRNMLSGYAEPAHVND
FMFEQQRRTFSTFGYALDPSVDTSQVSSNSYIGAVEEAEKNKGLTVFEAGPKKAEKRKKV
KGGDASEIDSFLGPWAKYQDEKGVAKPSEDEQKELDDIIAKRQKKGRNEEEAPAEEKTIL
HVKDAYDYQGRSYLHVPQDVGINLRSADIPEKCYLPKKQLHVWTGHTKGVSAIRLFPVSG
HLLLSCSMDCKIKLWEVYNDRRCLRTFIGHSKAVRDICFNNSGAQFLSAAYDRYLKLWDS
ETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEVVQEYDRHLGAV
NTITFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLACQSM
DNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVVSGDADGKLNIWDWKTTK
LYHRIKAHDKVCISALWHPHETSKVITCGWDGQIKLWD
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgtagttggttccctcgttgcgtatggcagtgattccgactcagaaaatgaa
actgagtccaacacgaatccagaaaaagtggaccccgacgcaatcgcacaccttcagcct
ttaaaatctggaagagcggcgtctttggctgttcttaattcagcgccggaggtcgccgtg
aaggaagatgttgagacgggcacacatctggatccctcactcaaagaggtcaactacaac
cctacctatgaaaccatgtttgcacctgagtttggaccagttaatccattcagaactcaa
caaatggctgctccgaggaacatgctgtctggatatgctgagcctgcccatgttaatgac
ttcatgtttgaacagcaaagaaggacgttttctactttcggctacgcattggacccatct
gtggacaccagtcaagtctcatcaaacagctatattggagccgtggaggaggcagagaaa
aacaaaggactgactgtgttcgaggccggtccaaaaaaggcagagaagaggaagaaagtg
aaaggtggagacgcatctgagattgacagcttcctgggaccctgggccaaatatcaggat
gaaaagggtgttgccaaaccctcagaggatgagcagaaagagttggatgatattattgca
aagagacagaagaaaggaaggaatgaggaagaggctcctgcagaggagaagaccatacta
cacgttaaagacgcatacgactaccagggccgttcatacctgcacgttccccaggatgtc
ggtattaacctgcgctcagcagacataccagagaagtgctacctgcccaaaaagcagctt
catgtctggacggggcacacaaagggtgtcagtgctattcggttgtttcctgtgtctggt
catctgctactctcctgttccatggactgtaagatcaagctgtgggaggtctacaatgac
aggagatgcttacggacgtttattggtcacagtaaggcggtgcgtgacatctgtttcaat
aactctggtgcccagtttctcagtgctgcttatgatcgctatctcaaactgtgggactca
gagacaggtcagtgtatctcccggttcaccaacagaaaagttccctactgtgtaaagttc
aacccagatgaagacaaacaaaacttgtttgttgctggaatgtcagacaagaagattgtg
cagtgggacatccgttcaggggaggtagttcaggaatatgaccgtcacttgggagctgtc
aacacaatcacgtttgtagatgagaaccggcgctttgttagcacctccgacgataagagt
ctgcgtgtatgggaatgggacataccggtggacttcaagtatattgcagagcccagtatg
cactcaatgcctgcagtgacactttctcccaatggtaagtggctagcctgtcagtccatg
gataatcagatcctgatatttggggctcaaaaccgattcaggctgaacaagaagaagatc
tttaagggtcatatggtggctggatatgcctgccaggtggacttctctccagatatgagt
tatgtggtgtctggtgatgctgatgggaagctgaacatctgggactggaagaccaccaag
ttgtaccaccgaattaaagcacatgacaaagtgtgcatcagcgctctctggcaccctcac
gaaacctccaaagtcattacttgcggctgggatggacagatcaaactctgggactaa
DBGET
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