Colossoma macropomum (tambaqui): 118816596
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Entry
118816596 CDS
T09004
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03030
DNA replication
cmao03410
Base excision repair
cmao03420
Nucleotide excision repair
cmao03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
118816596 (rfc1)
03410 Base excision repair
118816596 (rfc1)
03420 Nucleotide excision repair
118816596 (rfc1)
03430 Mismatch repair
118816596 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cmao03032
]
118816596 (rfc1)
03400 DNA repair and recombination proteins [BR:
cmao03400
]
118816596 (rfc1)
DNA replication proteins [BR:
cmao03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
118816596 (rfc1)
DNA repair and recombination proteins [BR:
cmao03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
118816596 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_30
AAA_7
AAA_5
AAA_16
Rad17
AAA_33
RuvB_N
BRCT_2
AAA_17
AAA_14
AAA_18
nSTAND3
RNA_helicase
AAA_19
NTPase_1
NPHP3_N
AAA_28
Motif
Other DBs
NCBI-GeneID:
118816596
NCBI-ProteinID:
XP_036438969
LinkDB
All DBs
Position
Unknown
AA seq
1137 aa
AA seq
DB search
MIIFNMDIRRFFAPTKVTKATTGSSGTDEELKNKKKASSKVISPKNDEKRPAKRKKRVIA
DSDSDEEEEKKEKKGKKIPREKTATSGKKDPITYVSDSDSDEAFMSLKKCSRPKENGSGH
SKKQSDSKEVKTAPLKSPVKPSAAGTKAEVKNVRSPTPPKPAASQPKHTATSAADFFGSS
TIHRSGKKLVASASTKRKAPTEDPEESCSDEAITKQLQMDEDMELEKQIHEDEEFARTLA
MLEEAPLAKKARVDTVSPSKNSSQGNAAGPKAASKGPSPKKSPLKTSSKLALMKRRADEA
GEQKNERDEKKSKMVISPKKESVTPTTSEMAATPKTGSISKGTSKSRRFSTPKSGGGSNK
TSPTKPEISPEGSEKKRVNSAAFRNYLNREGPRALGSKEIPQGAENCLEGCVFVLTGVLE
SMEREDAKSLIERYGGKVTGNVSRKTTYLVLGRDCGASKTEKAQSFGTKIISEDELLELI
RTKPGKKSKYEVASEAESKPTKSKTPQKPRMTNRSPGKSSPSPGKVWPASASTSGTSGAS
RRYSVSEVKKSLEFGNATPATSQPAAEDDGTSLLWVDKYRPRSLKNLIGQQGEQSCANKL
LRWLQNWHKRQSGNTKSAAARFGKFGGKDDGSGFKAALLSGPPGVGKTTTAALVCEELGY
SYVEMNASCTRSKNSLKEVIAESLNNTSIKNFYTGTSQTVSDKHVLIMDEVDGMAGNEDR
GGIQEMIGLIKQSKIPIICMCNDRNHPKIRSLANYCFDLRFQRPRVEQIKGAMMSIAFKE
GLKIPPPALNEIILASNQDVRQVLHNLCMWSATDKVMTYDQAKADANKAKKDMKMGPFDV
CRKVFASGEETAHMTLIDKLDLFFHDYSLAPLFVQENYIHVRPAAAGGNLKNHLVLLSKT
ADSISDGDLVDRQIRSRQSWSLLPTQAIYASVLPGELMRGYMSQFPTFPSWLGKFSSTGK
HSRIVQELASHMSLKTLSSKEAVNLDYLPYLRSALLVPLQSHGSEGANQSVKLMDNYDII
KEDFDSIMEISSWGGQPDPYSKLDSKVKAAFTRAYNKESHLTPYSLQTVKKVRRGATDAD
LGLDPENDLQGQEDEEEEEGVTADAMIKQKKAKAMKEAKQERAGDPGKGKGKGKGKK
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atgataatatttaatatggacatccgcaggttctttgcgcccacaaaggtcaccaaagcc
acaacaggcagcagcggcactgacgaggagctgaaaaataaaaagaaagcgtcttccaag
gtcataagccctaaaaatgatgagaagcgaccagcaaaacggaagaagagagtaattgct
gattcagactctgatgaggaagaggagaaaaaagaaaagaaaggaaagaaaatcccaaga
gagaagaccgctacatctggaaagaaggaccccatcacttatgtttctgattcagattcg
gatgaagcatttatgtcattgaagaagtgctccagacctaaagagaatgggagtggccat
agtaagaaacagtctgactcgaaggaggtgaaaacggctcctcttaaatcaccagtaaag
ccgtctgcagctgggaccaaagcagaggtgaagaatgtgcgtagtccaaccccaccgaaa
ccagctgcatcccaacccaagcacactgccacctcagccgccgacttttttggcagctcc
accatccatagatcggggaagaagttggtggccagtgccagcaccaagaggaaagcacct
acagaagaccctgaggaatcatgcagtgatgaagccattacaaaacaattacaaatggac
gaggacatggagttggagaaacagatccatgaagatgaggagtttgcgagaacattggcc
atgttggaagaggcccctttggctaaaaaggctcgtgtggatacagtgtcgccctcaaaa
aacagctcacaaggaaatgctgcaggccccaaggctgcctccaagggcccctcgccaaaa
aagagccccttgaagaccagctctaagctggctctgatgaagaggagagctgacgaagcg
ggggagcagaagaacgagagggatgagaaaaaaagcaagatggtcatctcaccaaagaaa
gagtcagttacgcctaccacctcagagatggcagccacaccaaaaacaggaagcatttct
aaaggaacgtccaaatcaagacgcttttctactcctaagagcggcggcggcagcaataag
acctctccaacaaaaccagagattagtcctgaaggctcagagaagaagcgagtgaattca
gcagcattccgaaactacttgaacagagagggtcctcgtgccctgggttctaaagagata
ccacaaggagccgagaactgtttggaaggctgtgtgtttgtgctgacgggagttttggag
tccatggagcgagaagatgcgaagtcattaatagagcgctatggtgggaaagtcactgga
aacgtcagtcgcaaaaccacatacctggtgttgggccgagactgtggagcctccaagact
gagaaggctcaaagttttggcactaagatcataagtgaggatgaactgctggaactgatc
cgaaccaaacctggcaagaagtctaaatatgaggttgcgtcagaggctgagagtaaacct
actaaatccaagactccccaaaaaccaagaatgaccaacagaagccctggcaagagcagt
ccttctccaggaaaggtttggcctgcttctgcctccacatctggaacttctggagcttcc
cgtcgatactctgtgtctgaagtgaagaaaagtctggagtttggtaatgccacacctgct
acgtcacaacctgctgcagaggacgatggaacaagcttgctgtgggtagacaagtaccgt
ccccgaagtctaaagaatctgattgggcaacagggagagcagagctgtgccaacaagctg
ctgagatggctgcagaactggcacaaacgtcaaagtgggaacacaaaatcagcagctgca
agatttggtaagtttgggggtaaggatgatggttctggctttaaggctgctctgttgtct
ggacctcctggtgttgggaagaccactactgctgcccttgtgtgtgaggagcttggttac
agttacgtggagatgaatgccagctgcacccgcagcaagaatagtctgaaggaagtgatt
gcagagtccctcaataacacaagcattaagaacttctacacaggtacatctcagacagtc
agtgataaacatgttcttataatggatgaggtggatggcatggcaggaaacgaggacaga
ggaggaatacaggagatgattggtctgataaagcaatcgaagatccccatcatctgcatg
tgtaacgaccgcaaccatccaaagatccgctcgcttgctaactattgctttgacctgcgc
tttcagcgcccccgcgtggaacagataaagggtgccatgatgtccattgcttttaaagaa
ggtttaaagatcccgcctccagcactcaatgaaatcatattggcatcaaatcaggatgtt
cgacaggttcttcataatttgtgtatgtggtcagccacagacaaagtcatgacctacgac
caggcaaaagcagatgctaataaagccaagaaagacatgaaaatgggtccgtttgacgtg
tgcaggaaagtgtttgcttcaggagaagaaactgcccacatgactttgatcgacaagtta
gatcttttcttccatgactactcactagcaccactctttgtccaagagaactatatacat
gtacggccagctgcggcagggggaaatctgaagaatcatttggtattactgagtaaaaca
gcagacagcataagtgatggagacttggtggacagacagatccgctctcgacagtcatgg
tctttactgcctacacaggcgatctatgccagtgtgctgccaggtgagttgatgcggggt
tacatgagtcagtttcctacatttcccagctggctagggaagttctcatccacaggcaaa
cacagccgcatcgtacaagagcttgcatcacacatgagtctgaagacgttgagtagtaag
gaggcagtgaatctggactacttaccctacctccgctctgcactgttggtgcctctgcag
tcacatggttcagagggggccaatcagagtgtgaagcttatggacaactatgacatcatc
aaagaggactttgacagtataatggagatcagtagctggggtggacagcctgacccttac
tccaaacttgactctaaggtgaaagcagctttcacacgtgcttataacaaggaatcccac
ttgaccccatactcgctgcagacagtaaagaaagttcgcagaggagccacagatgctgac
ctgggattagacccagagaatgacctccaaggtcaagaagatgaagaggaggaggaaggt
gttactgctgatgccatgatcaagcaaaagaaagctaaagctatgaaagaggccaaacag
gagagagcgggggatcctggaaagggcaagggcaaaggaaagggcaagaagtga
DBGET
integrated database retrieval system
