Colossoma macropomum (tambaqui): 118816973
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Entry
118816973 CDS
T09004
Symbol
fip1l1b
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118816973 (fip1l1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmao03019
]
118816973 (fip1l1b)
Messenger RNA biogenesis [BR:
cmao03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
118816973 (fip1l1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fip1
TSX
Motif
Other DBs
NCBI-GeneID:
118816973
NCBI-ProteinID:
XP_036439489
LinkDB
All DBs
Position
Unknown
AA seq
553 aa
AA seq
DB search
MSAEEAEKAAVQEPSSAGDEEEEWLYGDEGETKENEEEEEAKLTAAISAPAAPPVTDEVP
AGNGVATKEEAPGEDEDSESDSDDDDDDVRVTIGDIKTGAPQYTSYGATPVNLNIKTGTS
RPYGAVGTKVKGVDLDAPGNINGVPVLEVDMESFEEKPWRKPGADLSDYFNYGFNEETWK
AYCEKQKRLRMGIDPNISSTTSKISVQQGRTGNDKEVSVAAHVTKTDFTSPPSIYKTALN
PARISPPQWAGPATQDTPYYTKSSGTIDVIGGQTATISRVEGRRRHNLEGNNIQVISEHS
STEAEPMPAKMPAFFPPGPLPPNLPPPPFLPPPPVSQAPPLIPPPRLPITVPPPGFPPPP
GAPPPSLIPTTDTSGHPGGYDCRPVAPYPFPPGGYPPPLQGPVNSWSGMMDNSKQWDYYP
RREKERDKERERERPRERAHDREREREREHSPASMAYNSDEERYRYRDYGDRGYDRHRER
SSREKEERHRERRHREKEEGRHKSSRSSSRRRHDSEEGDGHRRHKHKKSKRSKEGKEPSE
ERAADQENQEAME
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcggaagaggcggagaaagcggccgtgcaggagccgagcagcgcgggggacgag
gaggaggagtggctgtacggagatgaaggagaaaccaaagaaaacgaggaggaggaggag
gccaaactgaccgcagccatcagcgccccagctgcccctcctgttactgacgaggtcccc
gctggcaatggagtggccactaaggaggaagcccctggagaggatgaagacagcgagagc
gacagtgatgatgatgacgatgatgtccgcgtcaccatcggtgacattaagacgggcgcg
ccgcagtacacgtcatacggggcaacaccggtcaatctgaacataaagaccggcaccagc
aggccttatggagcagtgggaacgaaggtgaaaggtgtggatctggacgctccaggaaac
attaacggcgtccccgtgctggaggtggacatggagtcctttgaggaaaaaccctggaga
aaacctggcgccgacctgtcagactactttaactacggctttaatgaggagacgtggaag
gcctactgcgagaaacagaagcgcctgcgcatgggcatcgaccccaacatcagctccacc
accagcaagatctccgttcagcagggcaggacaggtaacgataaagaagtctctgttgct
gctcacgtcactaaaactgacttcacctcccctcccagcatctacaagaccgccctcaac
ccggccaggatatcccctccgcagtgggcggggccagccactcaagacacgccctattat
acgaagtccagtgggaccatcgacgtgatcggtggacaaacggccaccatcagccgagtg
gagggacgacgccgacacaacctggagggaaacaacatccaggtgatttcggaacactcg
tctacagaggctgaacccatgcccgccaaaatgcccgccttctttcccccgggacccttg
cctccaaacttgcctcccccacccttcctgcccccaccgccggtcagccaggctccaccg
ctcatccctccgccaaggctgcccatcactgttcctcctcctggtttccctccacctcct
ggagctccgcccccttcactcatcccaaccacagacaccagtgggcaccctggaggatac
gactgccgtccggtcgccccgtaccctttcccaccaggtggttaccccccacccctgcag
ggtcctgtgaacagctggtccggaatgatggataactctaagcagtgggattattacccc
cgccgagagaaggagcgagacaaggagagggagagagagaggccgagagagcgagcacac
gacagagagagggagagagagagagagcacagcccggcttccatggcctacaacagtgat
gaagagcgctaccgctaccgcgactacggcgaccgagggtacgacaggcaccgcgagcgg
tcgagccgagagaaggaggagagacacagagagagaagacacagagagaaggaggagggc
cgacacaagtcgtcacgcagcagtagcagaaggaggcacgacagtgaagaaggcgacggc
catcgcagacacaaacataagaagtccaagaggagcaaagagggcaaagagccaagcgag
gagcgagcagctgaccaggagaaccaagaggccatggagtaa
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