Colossoma macropomum (tambaqui): 118817868
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Entry
118817868 CDS
T09004
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118817868 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmao03019
]
118817868 (edc4)
Messenger RNA biogenesis [BR:
cmao03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118817868 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
118817868 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
Beta-prop_HPS5
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_Prp19
Beta-prop_EDC4L
WDR55
RMC1_N
EIF3I
Pdc1_Ge1
Motif
Other DBs
NCBI-GeneID:
118817868
NCBI-ProteinID:
XP_036440738
LinkDB
All DBs
Position
Unknown
AA seq
1398 aa
AA seq
DB search
MASSSNIDIEGATQHLRDILKLDRPTNSAEASAVETQRKTSFNGELNGLLGADLIGTGVR
TAVVEPTAHNSDKMNTQDIQTISLSGDDGSTCIAITSSNVEIIASRDSSIESKARGSNKV
KIQPVAKYDWEHKYYYGNLIAVSNAYLAYAIRGTNNHSMIRVLRLGSSERTLLKGFTGAV
TDLAFAHLDSNLLGCVDEAGNMFIWQLTSHDSKIQDEVIVHVRRPEDTPLNSNRRLIWCP
FIPEDNEENPEDSCQTLALLHEDRAEVWDLDILRSSNSTWPVDATELKEGFITIKGHTAR
ISEGALSPDGTVLATASHDGYVKFWQIYIEGQDQPRCLHEWLPHNGRPLSCLLFCDNHKK
QDPEVPFWRFLITGADQNQELKMWCTVSWTCLQTIKFSPDPLNSSVLPSLKASLDLSAEY
LILTDVQRKVLYVMELLQDQDKGRASFTAVSEFLLTHPVLSFGVKDVSHARLRHTEVLPP
DEESESMTAEGSQGPSASKSGIQIKLYCVHTKSLQDVQIWFQPNQGAAASLFMPPCSGSQ
DGFGFADPLTDLSIEALSSDKESGGSGSQSDLCKIPALPAPADFLSPAGSAMPKLMTPDA
FMTPSASVPASPGSSASSLTIVTAMSSSDSGARTAEDLTQSPKLCTDGASNSLALSASTS
SPRSSSILISSLGENIQVLPSPNPPLSLDLQAIEPIMLPQASPTRARSPDVISSASTAMS
QDIPEIASETLQRGLGGTSAAEARDPLQGLHADSMASAASALHLLSPRNRNSSEHNLLPL
ELGGGAGDSEQRLSNTPSLLETALSQENAAAAAAASCPDSGANHSWPAAPDITRETRNSL
RDNGLGDCSREDLKERHMSSPYHRRTYHLTQNDSQDASAEQSDHDDEVASLASSSGNCGS
RASHRLPVKDWKTSPRGSPKLKRKSKKDDGESLQCRQADNQLSAEVQEELLLLLRSQQRE
LAELRQSQQELLQRVTGHMDAVQSSIMAHVEHVLLTQQEQEQRRIERVLAEGHGRSQQLQ
EHMAQQLAHTLGTTLSSRLDKVLREEMKKTVPQTISKSLEPVTGQMSNTIAAKLTAVEGT
LKENVIKVVKSKNTTDAIGRAAAEAMQGPIQAAYKDAFQSIVLPVFERGCQSMFQQINDS
FKQGTHEYIQQLETHVKNRKQREQDTRDPIIGQLQQMIDTLQSSQDQLATTVAASVRSEV
QHQLHMIVGNLQDSILTQVQRIVKGEVSLAMKEQQAAVTSSIMQAMRSAAGTPVPTAHLD
YQAQQASILQLLQQGQLNEAFQQALSAADLNLVLYVCETIDSQQVFGQNPCPLHQAVLLS
LIQQLSTSLATRTDLKISYLEDAVMNLDHGDPVTRDHMSAVLSQVRQKLFQFLQQDPHSP
LSKRARRLMMMLQGLVSH
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atggcttccagttccaacatagatatagagggcgcgacccagcaccttcgcgacatcctg
aagctggatcgacccactaattcagccgaggcttcagcagtagagacccaaaggaaaaca
tcctttaatggagagctgaatggactgctgggagctgatcttattggaacaggagttcgg
actgcagtggtggaaccaacagctcacaactcagataaaatgaacacacaagacattcag
acaatttccttgtccggggatgatggctctacatgcattgccatcacttctagcaatgtg
gaaattatcgccagccgtgactctagtattgagagtaaagctcgagggagcaacaaggtt
aaaattcagccagtggcgaaatatgattgggagcacaagtattactacggcaatctaata
gcagtgtctaatgcatacttggcatatgccattagaggcaccaacaaccattctatgatc
cgggtgctgcggctgggctcgtcagagcggaccctgctgaagggcttcactggggcagtc
acagatctagcctttgcgcaccttgactctaacctgctgggctgtgtggatgaggctggg
aacatgttcatctggcagctcaccagccacgacagcaaaatacaagatgaagtgattgtg
cacgtccggaggcctgaggacacgccgctgaattctaatcgcaggctcatctggtgcccc
ttcatccctgaggacaatgaggaaaacccggaagactcatgccagaccctggccctgttg
catgaggacagggcagaggtttgggaccttgatatcctccgctccagcaacagcacatgg
cctgtggatgccacagagcttaaagaaggcttcataaccattaaaggacacacagcgcgc
atcagcgagggagctctgtcacctgatggcaccgtcttggccacagccagtcacgatggt
tatgtaaaattctggcaaatctacatcgaaggacaggaccaacctagatgcctacacgag
tggctgccccataatggaaggcctctttcctgcctcctcttctgtgacaaccacaaaaag
caagacccagaagtgccattctggaggttcttaatcacaggagcagatcagaaccaggag
ctgaagatgtggtgcacagtatcatggacctgcctccagactatcaagtttagtcctgac
ccattaaactcaagtgtcttgcccagtctgaaagctagtctggatctctctgctgagtac
ctcatcctcacagacgtgcagaggaaggttctgtatgtaatggaactgctccaggatcag
gacaaaggccgtgcaagcttcacggctgtctctgaattcctgctcacacatcctgtactg
agctttggtgtcaaggacgtcagtcatgcccgcctgcgccacactgaagtccttccccca
gatgaagagagcgaaagcatgactgcagaaggaagccagggaccctctgcgtccaaatca
ggaatccagatcaagctttactgcgtgcatacaaagtccctccaggacgtgcagatttgg
ttccagcccaaccagggtgctgctgcctccctcttcatgcctccatgctccggctcccag
gatggctttggttttgcggatcctctcacagatctgagcattgaggcactgagctcggat
aaggaatccggtgggagtggctcgcagagcgacctgtgtaaaatccctgctctgccggct
ccagctgatttcctgagtcctgctggctcagccatgcccaaacttatgacaccggacgcc
tttatgacccccagtgcatctgtgccagcctcccctggcagcagtgcaagcagcttgact
atagtaacagccatgagcagctcagacagtggcgcaaggactgcagaggacctcacccag
agccctaagctgtgtacagatggagccagcaacagccttgccctgagtgccagcaccagc
agcccaaggtccagctccatcctcatctctagccttggtgaaaacatccaggtgctgccc
tcaccaaaccctcccctctccctggaccttcaggctattgagcccatcatgctgccccag
gcctcccccaccagggcccgttccccagacgtcatttcttccgcctccacagccatgtca
caggacatcccagagatcgcctcagagacgctacagagaggtctggggggcacatcagct
gctgaggcacgcgacccgctccagggtctccatgcggacagcatggcgtcggccgcctca
gccctgcacctgctctcgccacgaaaccgcaacagctccgagcacaacctgctgccgttg
gaactgggcggaggagccggggacagtgaacagagactcagcaatacaccatccctgttg
gagacagcattgtcacaggaaaatgccgctgcagcagctgccgcctcttgccctgatagc
ggagcgaaccacagctggcccgcagcaccggacatcacacgtgaaacgcgcaacagtctg
cgggacaatggcctgggagactgctctagagaggacctgaaggaaaggcacatgtcatcc
ccctatcacagacgcacctaccaccttacccagaatgacagccaggatgccagtgcagag
cagagtgatcatgatgacgaggtggccagtctggcatcatcctcaggaaactgcggctct
cgagcctctcacaggctccctgtgaaggactggaagacctcacctcgaggctcgccaaaa
ctcaagcgcaagagcaagaaagatgatggtgagtctttgcaatgcagacaggcggataac
cagctgagcgcagaggtacaggaggagctgctgctgctgctcaggagccagcagagggag
ctggctgagctgcgacagagccaacaggagctgctgcagagggttacgggccacatggac
gctgttcagagctccattatggcccacgttgagcatgtcttgctaacgcagcaggagcag
gaacaaaggagaattgagcgggtgttggcggaggggcatggacgtagccaacagcttcag
gagcacatggcccagcagctggcccatactctgggcaccacgctctctagccgcctggac
aaagtgctgcgcgaggagatgaagaagaccgttccacagaccatttcaaagagtctggaa
cctgttactgggcagatgagtaacactattgctgctaagctgaccgctgtggagggaaca
ctaaaggaaaacgtcatcaaagttgtcaagtctaagaataccacggatgcgattggcagg
gctgcagccgaggccatgcagggtcccatccaggcagcctacaaagatgccttccagagc
attgtgctccctgtgttcgagcgtggctgccaatccatgttccagcagatcaatgacagc
tttaaacagggaacccacgagtatattcagcagctggagacacatgtcaagaacaggaag
cagcgtgagcaggatacacgagaccctattattggtcagctacaacagatgattgacaca
ctacagagttcccaagatcagctggccaccactgtagcagccagtgtgcgctctgaggtt
cagcaccagcttcacatgatcgtgggaaatctgcaggattcgatcctgacgcaggtgcag
cgcatcgtgaagggtgaggtgagcctggccatgaaggagcagcaggcagcagtcacctcc
agcataatgcaggccatgcgctcagccgctgggacccctgtgcccactgcccaccttgac
taccaggcccagcaggccagcatcctgcaactgctgcagcagggccagctcaatgaggcc
ttccagcaggccttgtctgcagctgatttaaacctagtgttgtatgtatgcgagaccatt
gactcgcagcaggtgtttggccagaatccatgccccctgcaccaggccgtactgctctca
ctcatccagcagctctccaccagcctggccacacgcaccgacctcaagatcagttatctt
gaggatgcagtgatgaacttggaccacggggacccggtcaccagagaccacatgagcgcg
gtgttgtcccaggtgcggcagaagctgttccagtttttgcagcaggacccccacagcccc
ctaagcaagcgtgcccgtcgcctcatgatgatgctacagggcctggtcagccactag
DBGET
integrated database retrieval system
