Colossoma macropomum (tambaqui): 118818101
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Entry
118818101 CDS
T09004
Symbol
ddx3xa
Name
(RefSeq) DEAD-box helicase 3 X-linked a isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
118818101 (ddx3xa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmao03019
]
118818101 (ddx3xa)
03041 Spliceosome [BR:
cmao03041
]
118818101 (ddx3xa)
03036 Chromosome and associated proteins [BR:
cmao03036
]
118818101 (ddx3xa)
Enzymes [BR:
cmao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118818101 (ddx3xa)
Messenger RNA biogenesis [BR:
cmao03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
118818101 (ddx3xa)
mRNA cycle factors
Common to processing body (P body) and stress granule
118818101 (ddx3xa)
Spliceosome [BR:
cmao03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
118818101 (ddx3xa)
Chromosome and associated proteins [BR:
cmao03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
118818101 (ddx3xa)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
118818101
NCBI-ProteinID:
XP_036441165
LinkDB
All DBs
Position
Unknown
AA seq
812 aa
AA seq
DB search
MSHVVVDSSHGLDQQLSALDLNSADGQGGGTGKRYIPPHLRNKDAGKNAGNAYSSGRQSG
YSMPPVLSFSPKQYPQSWHPERNPRNRNNFHTGWDDFRTGYPRYPSQELAFYHTYSGGWP
ERCASPVRTDSSVTTDGNDDAASVLSWADRCDSPGWDGGRSNGFVNGYHDSRMNGGANFG
RGPPRNDRGGRDSFRGNRGGGTFNQPIHNTNFGGYDNKDGGWNTGLNRDAYSSFGGRSDR
GKPAFFNDRGTGSRGRYERGGFGGGGGMGNNRWVEESRDEEDWSKPTPPNERLEHELFSG
SNTGINFERYDDIPVEATGNNCPAPIENFHDVDMGEIIMGNITLSRYTRPTPVQKHAIPI
IKAKRDLMACAQTGSGKTAAFLLPVLSQIYTDGPGEALQASKASGQENGKYGRRKQYPIS
LVLAPTRELALQIYDEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVD
MMERGKVGLDYCNYLVLDEADRMLDMGFEPQIRRIVDQDTMPLKGVRQTMMFSATFPKEI
QILARDFLEEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVE
TKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGRCPIMVATAVAARGLDICN
VKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFYNDKNSNITKDLLDILVEAKQEVPS
WLESLAFEHQHKSSNRGRSKRFSGGFGARDYRQMAGGGNTFGNRGARNPGGHGGNRGFGG
NKGGFGNFVSDGYGGSYGNYGGNYTQVDWWGN
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggtcgtcgacagttcacacggtctagatcagcagctctctgccctagac
ttgaactctgctgacgggcagggtggaggcactggcaaacgttacattccacctcacttg
agaaacaaagatgctggtaaaaatgcaggaaatgcttattcctctggtagacagagcggt
tattcaatgccaccagtactgagcttttctcctaaacagtatcctcaaagttggcatcct
gagagaaaccccagaaacagaaataactttcatactggatgggatgactttaggactggt
tacccgagatacccttcccaggaacttgccttctatcacacctacagtggtggctggcca
gagagatgtgcctctcctgtgcgcactgacagcagtgtaaccaccgatgggaatgacgac
gcagccagtgtgctcagctgggctgaccgctgtgactctcctggatgggatggtggtcgt
agcaatggctttgttaatggataccatgacagtcgcatgaatggaggcgcaaactttgga
cgtggtcctcctcgcaatgacagaggtggccgcgacagcttccgtggcaacaggggtggt
ggtaccttcaaccagcccatacataacacaaactttggtggctatgataacaaagatgga
ggatggaacacaggtttgaacagggatgcctattctagctttggaggacgttctgacaga
gggaagcctgcattctttaatgacagagggactggatcgagaggaaggtatgagcgtggg
ggcttcggcggcggtggtggaatgggaaacaatcggtgggtagaggagtccagggatgaa
gaggactggtccaagcctaccccacccaatgagcgtctggaacatgagctgttctctgga
agcaacacagggattaactttgagaggtatgatgacattccggtggaggccaccggaaac
aattgtcctgcgcctattgagaatttccatgatgttgacatgggggagatcatcatgggc
aacataactctgagccgctacactcgtcccacccccgtgcaaaagcatgccattcccatc
attaaggccaagagggacctaatggcctgtgctcaaacaggctctgggaagactgcggcg
ttcctgctcccagtgctgagtcagatctacactgatggaccaggagaggctttacaggct
tctaaagccagtggtcaggagaatggaaaatatggtcgccggaagcagtatcccatctct
ttggtcctggctccaaccagagaacttgctctacagatttatgatgaagccaggaagttt
gcgtatcgctccagggtgcgcccctgcgtggtgtatggaggggctgacattggccagcag
atccgggacctagagaggggttgccatctgctggtggccacacctgggcgtcttgtagac
atgatggagcgaggcaaggttggcctagactattgcaattacctggttctggatgaggct
gacagaatgctggacatgggttttgagccacagatcagacgtattgtggatcaggacacc
atgccgctcaaaggtgtacgtcagaccatgatgttcagcgctacctttcccaaggaaatc
cagatactggctcgtgacttccttgaggaatacatattcttggctgtgggccgtgtgggt
tccacctcagagaacatcacccaaaaagtggtctgggtggaggagagtgacaagcgttca
tttttgctggacctgctcaatgccacaggcaaagattctctcacactggtgttcgtggag
actaagaagggtgcagatgctctagaggacttcctgtatcgcgagggctatgcctgcacc
agtatccatggtgaccgttctcagagggatcgtgaggaggcgcttcaccagttccgctct
gggcgttgccctattatggtcgccacagctgtggcagcccgtggacttgatatctgtaat
gtgaagcatgtcataaactttgacttgcccagtgacattgaggaatatgtccatcgcatt
ggacgcactgggcgtgtgggaaaccttggtttggccacctccttctacaatgacaagaac
agcaacatcaccaaagacctgctggacattttggtggaggccaaacaggaggttccttcc
tggctagagagtttggcttttgagcaccagcacaagagcagcaaccgtgggcgctcaaag
aggttctctggaggttttggggccagagattatcgtcagatggctggaggtggcaacacg
tttggcaaccgtggtgctcgcaatccgggaggccatggaggcaaccgtggttttggaggt
aataagggtggctttgggaatttcgtaagcgatggctatgggggaagttatggaaactat
ggaggaaactacacccaagtagactggtggggcaactaa
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