Colossoma macropomum (tambaqui): 118818293
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Entry
118818293 CDS
T09004
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118818293
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmao03019
]
118818293
03012 Translation factors [BR:
cmao03012
]
118818293
Enzymes [BR:
cmao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118818293
Messenger RNA biogenesis [BR:
cmao03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
118818293
Translation factors [BR:
cmao03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
118818293
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
Motif
Other DBs
NCBI-GeneID:
118818293
NCBI-ProteinID:
XP_036441407
LinkDB
All DBs
Position
Unknown
AA seq
550 aa
AA seq
DB search
MMDEDDKINLELIAALIRHIVMNEDDGAILVFLPGWDNISSLNDLLMADQMFKSDKFIII
PLHSLMPTVSQTQVFKRPPPGVRKIVIATNIAETSITIDDVVYVIDGGKIKETHFDTQNN
ISTMTAEWVSLANAKQRKGRAGRVSPGKCYHLYNGLRASLLDSYQLPEIQRTPLEELCLQ
IKILKLGPIASFLRKSLDPPSDRAIELAITHLMDLNALDHNEELTPLGFHLARLPVEPHI
GKMILFGALLACLDPVLTIATSLSFKDPFFIPLGKEKIADQRRKILSKNSRSDHLTVVNA
FSGWEEAKRRGYKCEREYCWDNFLSANTLQMLQNMKGQFAEHLLAAGFVSSKDPKDPRAN
INSDNEKLLKAVIVAGLYPKVAKIRPSLHKKRPMPAKVYTKADGKVCIHPKSVNAEETQF
HYTWLIYHLKMRTSSIFLYDCTEVSPFSLLFFGGDISIQKDKDQETIAVDEWIVFQSPAR
IAHLVKNLKKELDTLLEEKIKRPCPVDWSDRSSKDCAVISAIVDLITTQESPGAAPSGEP
SRKIPQHWDD
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgatggacgaggatgacaagatcaatctggagctgattgcagcactcatccgccacatc
gtgatgaacgaagacgacggcgctatcctggtgtttctgcctggctgggacaacatcagc
agcctgaacgatctgcttatggccgaccagatgtttaaatccgataagttcatcattatt
ccactgcactctctgatgcccacggtcagccagacacaggtttttaaaaggccgccaccc
ggagtccggaagattgtgatcgccacgaacatcgcagaaaccagtattactatagatgat
gtggtgtatgtgatcgatggagggaagatcaaagagacgcactttgacacccagaacaac
atcagcactatgactgcggagtgggtgagcctggccaacgccaagcagaggaaaggacga
gccggcagggtgtctccaggtaaatgctatcacctgtataacggtctcagggcgagtcta
ctggacagctatcagctccctgagatccagcgcaccccactggaggagctctgcctgcag
ataaagatcctaaagttgggtcctattgcgtcattcctgaggaagagtctggacccgccg
tcagacagagccatcgagctggccatcactcatctcatggacctgaatgcgctggaccat
aatgaggagctgactccattggggttccatctggcccgcctgcctgtggagccccacatc
gggaagatgattctgttcggagctctgctcgcctgcctggaccctgtgctcaccatcgca
accagcctgagcttcaaagaccccttcttcattccactgggcaaggagaagatagcagac
cagcggaggaaaattctgtccaaaaactccaggagtgaccacctcacagtggtcaacgcc
ttctcgggctgggaggaagctaagagacgtggctacaagtgtgagcgagaatactgctgg
gacaacttcctgtctgccaacacgctgcagatgctgcagaatatgaaaggacagtttgcg
gagcacctgttggccgctggctttgtgagcagtaaggaccctaaagatcccagagccaac
atcaactctgacaatgagaagcttcttaaggcggtcatcgtggccggcctttaccccaaa
gtggccaagatccgccccagcctccacaagaagagacccatgccagcgaaggtgtacact
aaagctgacgggaaggtttgcatccatcctaaatctgtcaatgcggaggagactcagttc
cactatacctggctcatctatcacctgaagatgaggaccagcagtatcttcctgtacgac
tgcacggaggtgtctcccttctctctgctcttcttcggaggagacatctccatccagaag
gacaaggaccaggagaccatcgctgttgatgagtggatcgtcttccagtctccagctcgc
atcgctcatctggtcaaaaatctgaagaaggagctggacacgctgctggaggagaagatc
aagcggccgtgccctgtggactggagtgaccgcagctctaaagactgcgctgtgatttcg
gccatcgttgacctcatcacgacacaggagagccccggggccgctccctcgggagagccg
tcgaggaagatcccccagcactgggacgactga
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