KEGG   Colossoma macropomum (tambaqui): 118818434
Entry
118818434         CDS       T09004                                 
Symbol
exosc5
Name
(RefSeq) exosome complex component RRP46
  KO
K12590  exosome complex component RRP46
Organism
cmao  Colossoma macropomum (tambaqui)
Pathway
cmao03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cmao00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    118818434 (exosc5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cmao03019]
    118818434 (exosc5)
Messenger RNA biogenesis [BR:cmao03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     118818434 (exosc5)
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 118818434
NCBI-ProteinID: XP_036441588
LinkDB
Position
Unknown
AA seq 217 aa
MEGDVCSVLREYGSEQNLLSKPDGSASFIQGDTSVLAGVYGPAEVKVSKEIYDRATLEVV
IQPKVGMPSVRERAREQCVRETCEAALLSTLHPRSSLTLILQEVHDDGSLLSCYLNAACM
ALMDAGLPMGRLFCGVTCAIDAESQIITDPTAQQEKESRALMTFAIDSKDRNIMTSSTKG
SFSVKELQQCIAVSQKASERIFQFYRDSVQRRYSKVL
NT seq 654 nt   +upstreamnt  +downstreamnt
atggagggcgatgtgtgttcggttctgagagaatacggcagcgaacagaacctcctgtct
aagcccgacggatcagcctccttcattcagggggacaccagtgtcctggcaggagtttat
ggaccagctgaagttaaagtgagcaaggagatctatgaccgggcgaccctggaggtggtg
atccagcctaaagtgggcatgccaagtgtccgggagcgtgcgagagagcagtgcgtgcgg
gagacgtgcgaagctgctctgctgtccactcttcaccctcgttcctccctcacactcatc
ctccaagaggtgcatgacgacggctctttgttgtcctgctacctgaacgctgcctgcatg
gcgctgatggacgccgggctgccgatgggccgcttgttctgtggcgtgacctgcgccatt
gatgcggaaagtcaaatcattacagaccccacggctcagcaggagaaggaaagtcgagca
ctaatgacctttgcgattgacagtaaagaccgcaatataatgacatcatcgacaaaaggt
tctttctctgttaaagagctgcagcagtgtatagcagtcagtcagaaggcctctgagcgg
atattccagttttatagagattctgtacaacgaagatattctaaagtactatga

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