Colossoma macropomum (tambaqui): 118818868
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Entry
118818868 CDS
T09004
Symbol
ptbp1b
Name
(RefSeq) polypyrimidine tract-binding protein 1b isoform X1
KO
K13218
polypyrimidine tract-binding protein 1
Organism
cmao
Colossoma macropomum (tambaqui)
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmao03019
]
118818868 (ptbp1b)
03041 Spliceosome [BR:
cmao03041
]
118818868 (ptbp1b)
Messenger RNA biogenesis [BR:
cmao03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
118818868 (ptbp1b)
Spliceosome [BR:
cmao03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
118818868 (ptbp1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
118818868
NCBI-ProteinID:
XP_036442283
LinkDB
All DBs
Position
Unknown
AA seq
566 aa
AA seq
DB search
MDGRLETELYPMGSNYAELDVVHDIAVGTKRGSDELFSCVSNGPYIMSSAANGNDSKKFK
GDIRSPGIPSRVIHVRKLPSDINEAEVISLGLPFGKVTNLLMLKGKNQAFLEMNTEEAAQ
TMVSYYSSVTPVIRNHPIFMQYSNHKELKTDNSPNQVRAQAALQAVNAVQTGSMSIAGVD
PSGVTGPSPVLRVIVENLFYPVTLDVLHQIFSKFGTVLKVITFTKNNQFQALLQFADGLT
AQHAKLALDGQNIYNACCTLRISFSKLTSLNVKYNNDKSRDYTRPDLPTGDSQPAIEHHA
MAAAAFATPGIISAAPYAGAHAFPPAFAIQQAAGLAVPGVPGALASLAIPGAAAAAAAAG
RLGFPTLSGGHCVMLVSNLNPERVTPQCLFILFGVYGDVIRVKIMFNKKENALIQMSDGT
QAQLAMSHLNGQKLYGRALRITLSKHTTVQLPREGHEDQGLTKDYSNSPLHRFKKPGSKN
YSNIFPPSSTLHLSNIPPSVVEDDLKMLFSSSGAMVKNFKFFQKDRKMALIQMGSVEEAI
ESLIEFHNHDLGENHHLRVSFSKSTF
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atggacggccgcctagagactgaattgtatcctatgggatcgaattacgcagaattagat
gtggtccatgacattgcagttggtacgaagagaggatctgacgagcttttctcctgtgta
tccaacgggccatatatcatgagttcagcagctaatggcaatgacagtaagaagtttaaa
ggtgacatcagaagtcctggtattccatctcgtgtgatacatgtacgtaagctcccaagt
gacatcaatgaggctgaggtcatctctctaggccttccctttggcaaagtcaccaacctg
ctcatgctgaaaggaaagaaccaggctttccttgagatgaacacagaagaagcagcccag
actatggtcagctactactcctcagtcacaccagtcatcaggaatcatcccatttttatg
cagtattccaaccacaaagagctgaaaacagacaattcaccaaaccaagtgagagcacag
gcagcactgcaggctgtgaatgcagtccagacaggcagcatgtctattgctggggtggac
ccctctggtgtgactggccccagccctgtgctcagggtcattgtggaaaaccttttctat
ccggtcacccttgatgtcctgcaccagatcttttctaagtttggcacagtgttgaaggta
attacatttacaaagaacaaccaattccaagctcttctacagtttgctgatggtcttacg
gctcaacatgcaaagctggccctggatggacagaacatctacaacgcctgctgtactctg
cgcatcagcttttccaagctgactagtttgaatgtcaagtacaataatgacaagagccgg
gactacacacgacctgatctgcccacaggggacagccagcctgctattgaacaccatgcg
atggcagctgcagctttcgctactcctggaatcatttctgctgccccatatgctggcgcc
catgccttccctccagcttttgctattcagcaggctgcaggattggctgtgcctggtgtt
cctggagccctggcttctctggctatccctggggccgcagcagctgcagcagcagcaggc
agactgggcttccccaccctctctggtggacactgtgtcatgctagtcagcaatctgaac
cctgagagagttacgccccaatgcctctttattcttttcggtgtatatggtgatgtgatt
agggtgaaaattatgttcaacaaaaaggagaatgctctgattcagatgtctgatggcact
caggctcagctggccatgagccatttgaatggccagaagttgtatggaagggcgctgcgc
atcacattatccaaacacacgactgttcagctgcctcgtgagggacatgaggaccagggg
cttactaaggattatagtaactctcccctccatcgctttaaaaaacctggctccaagaac
tactccaacatcttccctccctcatcgaccctgcatctttccaatatccctccttcggtc
gttgaagacgatctcaagatgctattttccagttctggtgccatggtcaagaacttcaag
ttctttcagaaagaccgcaagatggccctgattcagatgggttcagtggaagaagcaatc
gaatcacttattgaattccacaaccatgatcttggcgagaaccaccatcttagggtgtcc
ttctccaaatccaccttttag
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