Colossoma macropomum (tambaqui): 118818918
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Entry
118818918 CDS
T09004
Symbol
dhx38
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118818918 (dhx38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmao03041
]
118818918 (dhx38)
Enzymes [BR:
cmao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118818918 (dhx38)
Spliceosome [BR:
cmao03041
]
Complex C
Other components
Step II factors
118818918 (dhx38)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
T2SSE
nSTAND3
AAA_16
AAA_30
Flavi_DEAD
PhoH
AAA_7
Motif
Other DBs
NCBI-GeneID:
118818918
NCBI-ProteinID:
XP_036442357
LinkDB
All DBs
Position
Unknown
AA seq
1265 aa
AA seq
DB search
MEDDASLHRLEGSDPGAQVGGLMVKKKSAAVEQHVFRAPAPRTSLLGLDLLAAQKRKERE
GKEQLNSDLDDQRSKKSKVSSYKDWEEGKSDSGSDDDDEGGKSKNGRKESRKYRTAGSET
PSNPGGVSEEFRQKHQQREKDRWEHGVYASSKEDKSRDRNRERSKNTERDRDRERDKERK
SDRDDRERSRSRGSSSSRSEHGDGSVRSERSQRDGWSERISRGSRRDEPESPRHRPRDAP
TPSRSSWDEDDSGYASSRRSHWESPSPAPSHRESDRSERSYRSSRDSERRDKSVRARYPE
DTPLPTPSYKYNEWANDRKHLGSTPRLSRGKGRREDGEDGITFDNEEEKEQWEEDQRQAD
RDWYMMDEGYDEFHNPLTSSSDEYVKKREQILQKQTQKRISAQKRQLNEDNERWETNRML
TSGVVQRLEVDEDFEEDNAARVHLLVHNLVPPFLDGRIVFTKQPEPVIPVKDPTSDMAII
SRKGSQLVRKHREQKERKKAQHKHWELAGTKLGDIMGIKKEEDGSEGKHVGEDGAVDYRA
EQKFADHMKEKSEASSEFAKKKTLLEQRQFLPIFAVRQQLLNIIRDNSIVIVVGETGSGK
TTQLTQYLHEDGYTSYGMVGCTQPRRVAAMSVAKRVSEEMGSNLGEEVGYAIRFEDCTSE
KTMIKYMTDGILLRESLRESDLDHYSAVIMDEAHERSLNTDVLFGLLREVVSRRSDLKLI
VTSATMDSDKFAAFFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQALQIHLSGMVG
DILIFMPGQEDIEVTSDQIVERLEDLENAPSLAVLPIYSQLPSDLQAKIFQKAPDGVRKC
IVATNIAETSLTVDGIMFVVDSGYCKLKVFNPRIGMDALQVYPISQANANQRAGRAGRTG
PGQCYRLYTQSAFKNEMLTTTIPEIQRTNLANVVLLLKSLGVQDLLLFHFMDPPPEDNML
NSMYQLWILGALDNTGALTPTGRLMVEFPLDPALSKMLIVSCDMGCSADILIVVSMLSVP
TIFYRPKGREEESDQVREKFAVPESDHLTYLNVYLQWKNNNYSSIWCNEHFIHTKAMRKV
REVRAQLKDIMVQQKMNLTSCGSDWDVIRKCICAAYFHQAAKLKGIGEYVNVRTGMPCHL
HPTSSLFGMGYTPDYITYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSIKHAGKSRQEN
RRRAKEEISNMEEEMSLAEQQLRARKEEQERKNNIGSARSIKICTPGRREDVPMTPKRTP
ARFGL
NT seq
3798 nt
NT seq
+upstream
nt +downstream
nt
atggaggatgacgcctcgctgcatcgtctggagggcagtgacccaggtgctcaggttgga
gggctaatggtaaagaagaaaagtgctgcggtggagcagcacgtattccgagccccggca
ccacgaacatctctcctcggcctggatctgctggctgctcagaaacgcaaggagcgggag
gggaaggagcagctgaactcggaccttgatgaccagaggtcaaagaagtccaaggtgtct
tcctataaagactgggaggaggggaaaagtgactctgggtccgatgatgatgatgagggg
ggtaaaagcaagaacgggagaaaggagagccgcaagtaccgaacggctggctcagaaaca
ccttccaaccctggaggggttagtgaggagttccggcagaaacatcaacaaagggaaaaa
gaccgttgggaacatggagtatatgcgtcatccaaagaggacaaaagcagggacagaaac
agagaaagaagcaaaaacacagagcgggaccgggacagagaaagagacaaagaacgaaag
agtgatcgagatgatcgagagcgaagccgcagccggggttccagcagcagtcgttcagag
cacggggacggcagtgttcggagcgagcgctctcagagggatggctggtcagagcgcatc
agccgcgggagccgcagggatgagcctgagagtcctcgccatcggcccagagatgctcca
acaccgtcccgctccagctgggacgaagacgacagtggctatgccagctcacgacgctcc
cactgggagagcccctctcctgccccttcacaccgggagtctgatcgctcggagcgcagc
tatcgctcctcccgtgacagcgagaggagagacaagtcagtgagggctcgttatccagag
gacactcctctgcccacaccctcgtacaaatacaacgagtgggctaatgacaggaagcat
ctaggctccactcctcgtctctctagagggaaaggtagaagggaagacggagaggatggc
atcacttttgacaacgaagaggagaaggagcagtgggaggaagaccagaggcaagctgac
agagattggtacatgatggatgagggctatgatgagttccacaaccccttgacttcaagc
tcagatgaatacgtgaagaagagagagcagatcttacagaagcagacccagaaacgaata
tctgcccagaaaaggcagctcaatgaggataatgaacgttgggagacaaaccgaatgcta
accagcggtgtggtgcagcggttggaagtggatgaggactttgaagaagacaatgcggcc
agagtccacttgctcgtccacaacctagttcctcctttcctagatggcagaattgtcttc
accaagcagcctgagccagtcattccggtgaaagatcccacctcagacatggccatcatc
tcccgcaagggaagccagctggtccgcaaacacagagagcagaaggagcgcaagaaggct
cagcacaaacactgggagcttgccggtaccaagcttggagacattatgggcattaagaaa
gaggaagatggttctgaaggcaaacatgttggagaggatggtgctgtggactacagggca
gagcagaagtttgctgaccacatgaaagagaagagcgaggccagcagtgagtttgctaag
aagaagactctgctggaacagaggcaatttctgcccatctttgctgtccggcaacaacta
ctcaacatcatcagagacaacagcattgtaatagtagtgggtgagacaggcagtgggaag
accacccagctgacacagtacctgcacgaggacggctacaccagttacggcatggtgggt
tgcacacagccacgcagagtggcagctatgagtgtggccaagagggtcagcgaggagatg
ggcagcaacttgggagaggaggttggttatgctatccgttttgaagactgtacctcagag
aagacgatgattaagtacatgactgatgggatcttgttgcgagagtctctgcgcgagtca
gatttggaccactacagtgccgtcatcatggacgaggctcacgagcgttccctcaacacg
gatgtgctcttcggtctgctccgagaggtcgtgtccagacgttccgatttgaagctcatt
gtcacgtctgccaccatggactcggacaaatttgcggcgttcttcggaaacgttcccatc
tttcacattcctggaaggacattccctgtggacatcttgttcagtaagactcctcaggag
gactatgtggaggctgcagtgaagcaggctttgcagatccaccttagcggaatggtggga
gacatcctcatcttcatgcctggtcaggaggacatcgaggtaacgtcagatcagatcgta
gagcgtttggaagatctggagaacgctccctcccttgcagttctgcccatctattctcag
ctgccctcagacctgcaggccaagatcttccagaaggccccggacggtgtgaggaaatgc
attgtcgctaccaacatcgcagagacctctctgactgtcgatgggatcatgtttgttgtg
gattctgggtattgcaaacttaaggtgttcaacccacgcataggtatggatgctctgcag
gtttaccccatcagccaggccaatgccaaccagcgtgctggcagagctgggaggacaggg
ccaggccagtgctacaggttatacactcagagtgccttcaagaacgaaatgctgaccacc
accattccagagattcagcgcaccaacctggctaacgtggtgctgttgctgaagtctctg
ggggtgcaggacttgctactctttcacttcatggacccgccgcccgaagacaacatgctc
aattccatgtaccagctgtggatcctgggagctctggacaacacaggtgctctgacaccc
actgggcggcttatggtggaatttcctctggacccagcactgtccaagatgttgattgtg
tcctgtgatatgggctgcagtgccgacatcctcatcgtagtctctatgctgtctgtgcca
accattttctacaggcccaagggcagagaagaggagagtgaccaggtgagggagaagttt
gctgtccctgagagcgatcacctgacctacctcaacgtctacctgcagtggaagaacaac
aactattccagcatctggtgtaacgagcacttcatccacaccaaggccatgcgcaaagtg
cgggaagtgcgagcacagctcaaagacatcatggtgcagcagaaaatgaacctgacttct
tgtggctctgactgggacgtgatcaggaagtgcatatgtgcagcctatttccaccaggct
gcaaagctgaagggtatcggggagtatgtgaacgtacgaacagggatgccttgtcacctt
catcccaccagctctctctttggcatgggctacacccctgactacatcacctaccatgag
ctggtcatgaccaccaaggagtacatgcagtgtgtaacagcggtggacggcgaatggctg
gcggagttgggcccgatgttctacagcatcaaacacgccgggaagagcagacaggagaac
cgccggagagccaaggaggaaatctccaacatggaggaggagatgtcgctggccgaacag
cagctgcgtgcgcggaaagaggagcaggagaggaaaaacaacattggcagtgcgaggtca
ataaagatctgcactccgggcagaagggaagatgtgcccatgactccaaagcggactcct
gcacgttttggcctttag
DBGET
integrated database retrieval system
