KEGG   Colossoma macropomum (tambaqui): 118819350
Entry
118819350         CDS       T09004                                 
Symbol
rfc4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
cmao  Colossoma macropomum (tambaqui)
Pathway
cmao03030  DNA replication
cmao03410  Base excision repair
cmao03420  Nucleotide excision repair
cmao03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cmao00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    118819350 (rfc4)
   03410 Base excision repair
    118819350 (rfc4)
   03420 Nucleotide excision repair
    118819350 (rfc4)
   03430 Mismatch repair
    118819350 (rfc4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cmao03032]
    118819350 (rfc4)
   03036 Chromosome and associated proteins [BR:cmao03036]
    118819350 (rfc4)
   03400 DNA repair and recombination proteins [BR:cmao03400]
    118819350 (rfc4)
DNA replication proteins [BR:cmao03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    118819350 (rfc4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    118819350 (rfc4)
Chromosome and associated proteins [BR:cmao03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    118819350 (rfc4)
DNA repair and recombination proteins [BR:cmao03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     118819350 (rfc4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    118819350 (rfc4)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid Rad17 AAA_assoc_2 AAA_16 AAA_22 AAA_30 AAA_11 AAA_24 Mg_chelatase SLFN-g3_helicase AAA_14 DUF815 Cdc6_lid Gp44_lid AAA_5 AAA_28 RuvB_N AAA_19 DNAX_ATPase_lid ResIII AAA_7
Other DBs
NCBI-GeneID: 118819350
NCBI-ProteinID: XP_036442985
LinkDB
Position
Unknown
AA seq 357 aa
MQAFLKGSTQSVKPQRDKAAAGSSGEKRQRAVPWVEKYRPKCVDEVAFQEEVVAVLKKSL
EGADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVIREKVKNF
AQLTVAGTRPDGKACPPFKIIILDEADSMTNAAQAALRRTMEKESRTTRFCLICNYVSRI
IEPLTSRCSKFRFKPLANDIQRERLIEICEKESLKYSKEGIEALVKVSEGDLRKAITLLQ
SAARLSAEKEITESVIIEIAGVVPPKVIENLLQTCYRGTFEKLEVAVKTMIDEGYAGTQI
LNQLHDIIMEESLSDKQKSVITEKMAVVDKCLADGADEYLQLLGLSSVIMQQATQSS
NT seq 1074 nt   +upstreamnt  +downstreamnt
atgcaggcgtttttgaaagggtctacacaaagcgttaagccgcagagggataaggctgca
gccggcagcagtggagagaagcgacagagagcagtgccatgggtggagaaatacagaccg
aagtgtgtggatgaagttgcgtttcaagaggaagtagttgcagtgttgaagaaatcacta
gagggcgctgatcttcctaatctactgttttatggaccacctggaacaggaaagacctcc
actattcttgctgcagcaagagaactttatggcccggagctctaccggcagagagtgttg
gagctgaatgcatctgatgagagagggattcaggtgatccgggaaaaggtgaagaatttt
gctcagttgacagtggctggtacacgacctgatgggaaggcttgccctccatttaaaatc
ataatactggatgaggcagactcaatgaccaatgctgcccaggctgctctcagacgcacc
atggagaaagagtcacgcaccacacgcttctgccttatctgcaactacgtcagcagaatc
attgagcctttgacttcccggtgctccaagttccgctttaaacctctcgccaatgacatt
caacgggagcgactcatagaaatctgtgagaaagagagcctcaaatacagcaaagagggg
attgaagcgctggtgaaggtgtcagaaggtgatctgcggaaagctataacgcttctccaa
agcgcagccaggctcagtgcagagaaagaaatcacagaaagcgtcatcatagagatcgca
ggggtggttccgcctaaagtgatcgaaaatctgcttcagacctgttacagaggcaccttt
gaaaaactagaggtcgctgtgaagacgatgatagatgaaggctacgctggcacacagatc
ctcaaccagctccatgatatcatcatggaggaaagcttgagtgacaaacagaagtctgtt
atcacagagaagatggcagtggttgataaatgcttagcagacggtgctgatgaatacttg
cagctgttgggcctctcctccgtcatcatgcagcaggccacgcagagcagctga

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