Colossoma macropomum (tambaqui): 118819678
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Entry
118819678 CDS
T09004
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118819678 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmao03021
]
118819678 (pcf11)
03019 Messenger RNA biogenesis [BR:
cmao03019
]
118819678 (pcf11)
Transcription machinery [BR:
cmao03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
118819678 (pcf11)
Messenger RNA biogenesis [BR:
cmao03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
118819678 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
DUF6980
Motif
Other DBs
NCBI-GeneID:
118819678
NCBI-ProteinID:
XP_036443413
LinkDB
All DBs
Position
Unknown
AA seq
1492 aa
AA seq
DB search
MSDEAARKEACREYQSSLEDLTFNSKPHINMLTILAEENLQFTKDIVAIIEAQIAKAPPA
EKLPVLYLVDSIVKNVGGEYLEVFAKNLVTSFICVFEKVDENTRKSLFKLRSTWDEIFPL
KKLYSLDVRVNALDPAWPIKPLPPNVNASIHVNPKFLKPTEEVASARVITPQPQVHPTVV
EKSLTKEQIIRQQLLAKQKQLLELQQKKIELELEQTKAQLAASTNHPPVNAQVQFDPVPA
VSQPGPTSHNKSWPSAAAEKMSTRDPRLNRATATSINTKEQGTYKKESQITLSVNTVDKR
PVSTERPSKLMRIPKKDLSATEEKAKSKSVSPSSKGILNKNKDFELEHTKTSDVNKKDPR
LRKQMHEKADPKEDDMKEKKRSEKKERDDAPKGTEQQRSTNSRGKLVNGSLNKHERLETF
QKQEIKVNKANLRKRSRSRSRSPTAHSPKRKERRSPKRRTRSITPPSKSGKGRQLSKHPH
SEDTIQQSNVREDRSTPKKSVAEQRRLKRPLDDRPLEQRASPAEHKSTKDGKKWRSGWEE
NKLLKQSEPDLLHGKPGPPRHKTWSNQRPATPRTPKQHRLSVDANLQIPEVLNSANKRDL
LRKASQRLANGELSHDDFLNVAHQIKQLFQYQEERQRSDSWEGSSDDGSYTSKRPSHGQM
SDAELSYFEHKSKLRRTQLQRPVHQNPPLSENMLHHRPQHEEDDLLGEISDAHKKSSDTL
KPFSGHDDPRRNDRPPSRTGPVIRNSQSPVNCDGISGKSPAAPFEGSSPPMEMEPFDEGE
ITPRFESPNSVHSGTGPDSEGPLSLETPLRHDMISGPGRSGRTLVESPGHTPPHSSEGPN
TQTNILKHDGMTIPPRFDGHKSSHPSFEGPHGHMVQPRPDGLGRPHPPGRYEGNTGPGRY
DGPGGHVPSRYDGHGRYDTHAPNRFERPPLLKGPGRYDNQPVAHVPGRYGEPHGVGRFDG
PGTGRFDGPVGHQGPGRFGPGPMRFDNPAQANRFDGPTRFDSPHIPPGPPGGFDGPMRYP
AGPGNFEGRRLEGPGNQTGIMRFDTPVQPTPMRFDGQPPGMTRFDTPQGPPRYCGPPDMQ
NALRLQGQTMFDQPQSQAPVLNPGVPTPNFNMAPPNAFGGQPQPFHIQPNVSHVSNFNVP
ASAPSGFQNSYRPVTPFSGAGNPPQPMAMLPAQTIIQANPVPFNPPSSQFVQPESHLGQM
DVNDLLAKLISSGIIKPTQTDSSSESTSAPQSQSVPEEEEPEEEEQEEDENLPDLTSFAL
DDMKQRHECVITKLYTGIQCYSCGMRFTASQTDVYADHLDWHYRQNRSEKDISKKVTHRR
WYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVQKTQEAAKEREFQSVKAAPDVVDESC
EICQEQFEMYWEEEEEEWHLKNAMRVDGKTYHPSCYEDYKNTSSFMDCTPSPNKMLTENP
LNVFLKQEREGEASCSSIKEEPAEENTDTVTVKEEVQVKLEGESQTTSAIIF
NT seq
4479 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgaggctgcgaggaaggaagcctgccgagagtaccagtcgtctctggaagac
ttgactttcaacagcaaaccacacatcaacatgctgaccatcctagccgaagagaatcta
cagttcaccaaggatatcgtcgcaataattgaagcgcaaattgccaaggcacctcctgct
gagaagcttcctgttttgtacttagtggattccatagtgaagaatgttggaggagagtac
cttgaagtgtttgctaaaaacctagtcacttcctttatatgtgtttttgagaaggtggat
gagaacactagaaaaagtctcttcaaattgcgttccacctgggatgaaattttccccttg
aagaagctgtattcgttagatgttcgtgtgaatgctcttgatcctgcttggcccattaag
cctttgccaccaaatgtgaatgccagcatccatgtcaatcccaaatttttaaagccgact
gaagaagtagcatctgcgcgggtcattacaccccagccacaggttcatcccacagtggtt
gagaagagcttgacaaaggaacagataataaggcaacagttgcttgctaagcaaaagcaa
ttgctagagcttcagcagaagaagatagaacttgagcttgaacaaacaaaagcccaactg
gctgccagtacaaaccacccacctgtcaatgctcaggtccagtttgatcctgttccagct
gtcagccaaccaggtcctacatcacacaacaaatcatggccttcagcagcagcagaaaag
atgtcaaccagagatccaagattaaacagagctactgctacatcgataaataccaaggag
caagggacatacaaaaaggagagccaaatcacactaagtgttaatacagttgacaaaaga
cctgtatccacagaaagaccaagtaagctaatgaggataccgaaaaaagatctctctgca
actgaggaaaaagcgaaatccaaatcagtgtcaccatcaagcaaaggcatccttaataaa
aataaagattttgaactcgaacacacaaagacatccgatgttaataaaaaagacccaagg
ttgcggaagcagatgcatgaaaaggctgacccaaaagaggatgacatgaaggagaagaaa
agatctgagaaaaaagaaagggatgatgctcctaaaggcactgaacagcagagatccaca
aactctagaggcaaacttgtaaatgggtctctgaataagcatgaaagacttgagactttt
cagaaacaagagattaaagtgaataaagctaatctcaggaaaagatctcggtccagatct
cgttcaccaactgcacactctcccaaaagaaaagagaggcgatctccaaagcgaagaaca
aggagcatcactccaccttccaaatctggaaagggtaggcagttaagcaaacatccacac
agtgaagacactatccaacaatcaaatgtcagagaggaccgaagtacacctaagaagagt
gttgctgaacaaaggcggttaaaaagaccactggacgatagacctcttgagcagagagca
tcacctgcagagcataagagtacaaaagatggcaagaaatggagaagtggatgggaagaa
aacaaacttcttaaacaatctgagccagatcttttgcatggcaaacctggacctccaagg
cataaaacttggagcaatcaaagacctgccacaccacgaacaccgaaacagcaccggcta
agtgttgatgccaacttgcaaataccagaagtgcttaattctgccaacaaaagagatctt
ttacgaaaggctagccagagattggctaatggagagctatcacatgatgacttcctcaat
gtggcccatcaaatcaagcagctttttcaatatcaagaagaaagacagcgttctgattca
tgggaaggatcaagtgatgatggttcatacacatcaaaaagaccatctcatggacagatg
tctgatgctgagctttcttactttgagcacaaatctaagctgagaagaacccagctgcag
cgtccagttcaccagaacccacctctgagtgaaaacatgcttcatcacaggcctcaacat
gaggaagatgatctacttggcgagatctcagatgcacacaaaaagagcagcgataccctt
aaaccattctcagggcatgatgatcctagaagaaatgacagaccaccatcacgaacagga
cctgttatcagaaattcccaaagtccagtaaactgtgatggaatctctgggaaatctcct
gctgcgccatttgaagggtcatcaccacccatggaaatggagccgtttgatgagggagag
attactcccaggtttgaaagtcctaacagtgttcactctggcacaggaccagacagtgaa
ggtccactaagtttagaaactcctttaaggcatgatatgatctcaggaccaggaagaagt
gggcggacccttgttgaatctcctgggcacacaccgcctcactcttctgaagggcctaac
acgcagacgaatattctaaagcatgatggaatgaccatcccaccacgatttgatggacac
aagagttcccatccttcatttgaagggccacatggccacatggtacagccaagacctgat
ggtcttggtagacctcatcctcctggaagatatgagggaaatacaggtccaggaagatac
gatggacccggtggtcatgtaccctctaggtacgatggacatggtcggtatgacacccat
gcaccaaacaggtttgaaagacccccactattgaaaggccctggaaggtatgataaccag
cctgtggcacatgtgccagggagatatggggagcctcatggtgtcggaagatttgatgga
cctggaacaggtcgttttgatggtccagtgggacatcaaggtcctggaagatttggtcca
gggccaatgcgttttgataatccagcgcaggcaaatagatttgatggccccacaaggttt
gatagtcctcacataccaccaggcccacctggaggatttgatggcccaatgaggtatcct
gctgggccgggcaattttgaggggcggagacttgaagggccagggaatcagactggcata
atgcgctttgacactccagtacagccaacacccatgagatttgatgggcagcctcctggc
atgacaagattcgacacgccacagggtcctccaagatactgtggacctccagatatgcaa
aatgctttgagactacaagggcagaccatgtttgatcagccacagagtcaagccccagta
ttaaatccgggtgtcccaacacctaatttcaacatggcaccaccaaacgcatttggtggt
caaccacaaccatttcacatccaaccaaatgtctcacacgtatcaaactttaatgtacca
gcctccgcaccttcaggatttcagaattcatacaggccagttactccgttttctggtgct
ggaaacccccctcagcctatggccatgttgcctgctcagaccatcatacaagcaaaccca
gtgccttttaatcctcccagttcccagtttgtacagcctgagagtcatctgggccaaatg
gatgttaatgatctgttggccaaactgatatccagtggaattatcaaaccaacacaaaca
gactcgagcagtgaatccacatcagcgccgcagtctcagagtgtaccagaagaggaggaa
ccagaagaagaggaacaagaggaagatgaaaatctccctgatctgactagcttcgcttta
gatgacatgaaacagagacatgaatgtgtcatcactaaactatacactggaatccagtgc
tattcctgtgggatgcgctttaccgcttctcagactgatgtttatgcagatcacttggat
tggcactacagacaaaatcgttctgagaaagatatcagtaagaaagtgacacatcggcgt
tggtactacagtctgacggactggattgaatttgaagaaattgctgatcttgaggaaagg
gcaaaaagtcagttcttcgaaaaagtccatgaagaagttgtacagaaaacccaggaagca
gcaaaagagagggaattccagagtgttaaggctgccccagatgttgttgatgaatcctgt
gagatatgccaagagcagtttgagatgtactgggaggaagaagaggaggaatggcacctg
aaaaatgccatgagagttgatggaaagacatatcacccgtcatgttatgaagactacaaa
aatacatcttcctttatggattgcacaccatcgcccaataagatgctcactgaaaatcct
ttaaatgttttcttaaaacaagaaagggaaggtgaggcatcatgctccagtattaaagaa
gagccagctgaggaaaacacagataccgtaacggtaaaagaggaggttcaggtgaagttg
gaaggagagtcacaaacaactagtgcaattattttttaa
DBGET
integrated database retrieval system
