Colossoma macropomum (tambaqui): 118819953
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Entry
118819953 CDS
T09004
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03013
Nucleocytoplasmic transport
cmao03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118819953 (upf3a)
03015 mRNA surveillance pathway
118819953 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmao03019
]
118819953 (upf3a)
Messenger RNA biogenesis [BR:
cmao03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
118819953 (upf3a)
mRNA cycle factors
P-body specific factors
118819953 (upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
DUF6980
RRM_1
Motif
Other DBs
NCBI-GeneID:
118819953
NCBI-ProteinID:
XP_036443924
LinkDB
All DBs
Position
Unknown
AA seq
480 aa
AA seq
DB search
MRAEREQTTGSRERSIVEIQFRDTQREQESASANQKQKEEKKEIFTKVVIRRLPPSLSKD
QLEEHLSPLPSFDYFEFFPADQSLYPHLFSRAYINFKNPDDIVLFRDRFDGYVFIDNKGQ
EYPAIVEFAPFQKVSKKKLKKKDAKAGSIEEDPEYKRFLENYSCDEEKSMANPETLLGEI
EAKTRELIAKRTTPLLEYIKNKKLEKQRIREEKREERRRRELEKKRQREEEKRKRREEER
RKRKEAEKQKKLSEKEIKIKLLKKCDRDDEVDSDRLKDKGDSGETERNKWEKPAGHKSKE
PKDKVQLESDKEQREGHGRRQRDKEHRGREEERKRQRHHYEFDKFMRRKDETKWGKGYCQ
DRAKKDGHNHSYSYCPETGDKLGKEDRDDMGNRKERIRNKSVLVHQEKRTSQSEGPDQIG
GALPAKDRPAMQLYQPGARNRKRMGSGNKAFDFSPISPESGTEHCYELAIGTGSEKSGDE
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgagggctgaaagggagcagacgacaggaagcagggagagaagcatcgtcgagatccag
ttcagggacacccagagggagcaggagagcgcctcggccaaccaaaaacagaaagaggag
aaaaaagaaatcttcactaaggttgttattcgccggctgccacccagtctatcaaaagac
caacttgaggagcatctcagtccactgccttcatttgactattttgaattctttccagct
gatcaaagtctgtatccacatcttttctccagagcctacatcaactttaaaaaccctgat
gatattgttctcttcagagatcgctttgatggttacgttttcatcgacaataaaggccaa
gagtatccagctattgtagaatttgcaccttttcagaaagtttccaagaagaaactcaag
aagaaagatgccaaggcaggaagcattgaggaagacccagaatacaaacgatttctggag
aactactcctgtgatgaggagaagtcaatggccaatccagaaacactgctgggggagatt
gaggctaaaacaagagagctcatagctaaaaggacaacaccacttctggaatacataaag
aacaagaagttggaaaaacagagaatccgggaggaaaaaagggaagagaggcgccggaga
gagctggagaagaaacggcaaagggaagaggagaagaggaaacgcagggaggaggagagg
cgaaagcgtaaggaagcagagaaacagaagaaactctctgaaaaggagatcaaaatcaag
ctcttgaagaaatgtgacagggatgatgaggtggactcagatagactgaaagataaagga
gacagtggagagacagagaggaacaagtgggagaaacctgcaggacacaagtcaaaggaa
ccaaaggacaaagttcagctggagagtgataaggagcagcgtgaaggccacggccgccgg
cagagggacaaggagcaccggggtcgagaagaggagcgcaaacggcagcgacaccactac
gagttcgataagttcatgcggcgcaaggatgagaccaaatggggcaaaggctactgtcaa
gacagggccaagaaagatggccataatcacagttactcgtactgcccagagacaggggac
aagctgggcaaggaggacagggatgacatggggaacaggaaagagcgcattcgcaataag
tctgtgttagtgcatcaggagaaaaggacctcccagtctgaggggccagaccagatagga
ggggctctgccagccaaggaccggcctgccatgcagctgtaccagccaggcgcccgcaac
cgcaaacgcatgggctccgggaacaaagcctttgacttcagccccatctctccagagtcc
ggcactgaacactgctacgagcttgctataggaacgggctctgagaaaagtggagatgag
tga
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