Colossoma macropomum (tambaqui): 118820174
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Entry
118820174 CDS
T09004
Symbol
nup188
Name
(RefSeq) nucleoporin NUP188 homolog isoform X1
KO
K14311
nuclear pore complex protein Nup188
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118820174 (nup188)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmao03019
]
118820174 (nup188)
Messenger RNA biogenesis [BR:
cmao03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
118820174 (nup188)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup188_SH3-like
Motif
Other DBs
NCBI-GeneID:
118820174
NCBI-ProteinID:
XP_036444228
LinkDB
All DBs
Position
Unknown
AA seq
1729 aa
AA seq
DB search
MAESEMCARSSQELWTILLGRSALREPAQIEAELDRNGERLLQGLSYYKPPSSSSADKLK
ANKNVAQPLKDFGLRISKLLGLDEQQSVQILQCYLQDDYRGTRNTLKTVLQDERQSQALL
LKIADYYYEERVCLLRCVLLLLTYFQDERHPYRAEYATCVSKLEKDLVNNYQQQFEALFN
AEAPTWETHGNLMTERQVSRWFTQCLREQALLLEVLFLYYAYFEMPPSDLSTFTRLFKEQ
GFGQRQTNRHLVDKSMDALVDRIGYFSCLILVEGMDIDFLHKCALEDRTEQHQLSNTPDI
NKEMDQMLLTFGDISHHGPVLLAWVLLRHTLQPVEAGPVVRRLGQTTLQLGVFQYLTDML
QALGNTDNNCTASTARMCIYGLLSFVVTSFEEDTLGSQQHLINAACEVLAAPSLAELFWE
SKPNVGLEMILDSAVGVFPHKTGPLLQLLTALLSDKSTAKRVYTFLDKMSFYTEVYKNKP
NDVLSREDETLWRRLAPKLLYPLGAGQTNLRMPQGCYGQVCVGEQGYVVRWDYSYSSWTL
FTCEIEMLLHVVSTADVLAHCERVKPILDLVHKIISTDWTVSDCLLPLTSRIYMLLQRLT
SVINPPVDVIASCVNCLIVLATRQPAKVWSSLQHTGFLPFASVPLTTMAQTISAEGMKAG
NYGNLLVLFEQPRGEYAVTVAFLRLVTTLVKGQVGSTQSKGLIPCVLLVLKEMLPSYHKW
RYNTHGVREKIGCLILELVHAILNLSPEGESEGSTPSLQSLCIYSLANTEAGQAVVNIMG
VGVDTISVVLAAQPSSSGSCEGPGQVLIQTVKLAFSVTNNVIRLKPQSDTVSPLEQALTQ
HGGHGNNLIAVLAKYIYHKHDPALPRLAVQLLKRLASVAPMSVYACLGSDAAAIRDAFLT
RLQSKTVDLRIKVTILEFLTVAVETQPGLIELFLNLETKDGSEGAKEFSLGEWSCLAVVL
ELLDCELQGQYWCPPLLQRAALAFLHALWQDRRDSALSVLRTKEKFWDNLTTPLFGTLPP
PSETTEPCVLESCAFVMKIIGLEIYYVVSGQLEGSLKAALQRLSSQRRYEFWSQYVRELV
CAACEGEDGGMRSLSESQMLISAWRTLLILSTSHSDVMQLKEDAVRLKLFMDVLEGTKAA
LLMPQSVACLRLGSMMATLLLILLKQWKSVLVSAPALLPPLSLMLENVLQADQQLMERTK
AKLFSALISALHIQGLNGGEITQLPQLLLCVCETVQDEALALIDSTRHITQKSDTQEDSM
ETDTPRSVQKDQRDSVCVLALHLSKELCRADEDGEQWLQVMRKLPVLPSVLSALELSLRS
KQNLYFTEAALHLLLTLARTPQGAAAVAGAGVIQSICLPLLSVYEGPANGATQAFSRKPL
DAPCWPGVYRLCLSLMESLLKTLRYNFINEALDFVGVHQERILQCLSAVRTVQSLACLDE
ADHTVGFLLQLSSFCKEWQFHLPQLLRDVQVNLCYLCQTCTYLLHSKKMLHHYLQAKNGD
ALPQGSRPQRVLQPTSKEQPLSGEREEAESKALQAVQCSLLKILSKTLATLQHFTPDCCQ
ILLDQSMDLAEYRTLFVLSFTTPAFDSDVAPSFGTLLATINVALSMLGEIEKKKEPAVSS
EETQALKSLLMFSMENCFYVLISQAMRCLKDPAVLPRDKQRVKQELSSELSTLLTTLFRF
FRRGSPSSPASGLLPSPQTKPTTPGAKVTQEGQEPFIQLVQAFVRHVQR
NT seq
5190 nt
NT seq
+upstream
nt +downstream
nt
atggcggagtcggagatgtgtgcgaggagcagtcaggagttatggaccatcttacttggg
agatccgccttgcgggagccggcccagatagaagcagaattagatcgaaatggagagcgg
ctgctgcagggcctttcctactacaaaccacctagttcttcatcagcagacaagctgaag
gcaaataaaaacgttgctcagcctctaaaagactttggactcagaatcagcaaattgctg
ggtctggatgaacagcagagcgtgcagattctgcagtgttacctgcaggacgactacaga
ggcactcgcaacacactaaagacggtgctgcaggacgagagacagagccaggccttactg
ctcaagatagccgattattactatgaggagagggtgtgtctcctgcgctgtgttctcctc
cttctcacctacttccaggatgagaggcatccctatagggcggagtacgctacctgtgtg
agtaaactggagaaggacctagtgaataactaccagcaacagtttgaagctctattcaac
gcggaggctccaacatgggaaactcacgggaacctgatgacggagaggcaggtgtctcgg
tggtttactcagtgtctgagggagcaggctttgctcctggaggttttgttcctgtactac
gcctacttcgagatgcctcctagtgacctttcaacctttactcggctgtttaaggagcag
ggcttcgggcagcggcaaaccaacaggcacctcgtagacaagagcatggacgcattggtg
gaccgaatcgggtatttcagctgcctgattctagtcgaggggatggatattgactttttg
cataaatgtgctctggaggatcgaacagaacaacaccaactcagcaacactcccgacatc
aacaaggagatggatcagatgttgctgacgtttggtgatatctcccaccacggcccggtt
ctgctggcctgggtccttctcagacatacgctccagcctgtggaagctggtccggttgtc
agaaggctcggccaaacgacgctccagctgggagtgttccagtacctcacagacatgctg
caagcccttggcaacacagacaacaactgcactgccagtactgcgcgaatgtgtatctat
ggtctcctctcattcgtggtcacctcctttgaagaggacactttgggcagccagcagcat
ctgatcaacgctgcctgtgaggtcctcgcagccccaagtctagccgagctcttctgggag
tcaaagcctaatgtgggtctggagatgatcctggactctgcggtgggggtctttcctcac
aaaactgggccgttgttgcagttacttacagccctactgtctgacaaatctactgctaaa
agggtgtacacgtttctggataaaatgtctttctacacagaggtgtacaaaaacaaaccc
aacgacgtgctgtccagagaggatgagacgctgtggaggagactggcacccaaactcctc
tatcctctgggtgcgggtcagactaacctgcggatgcctcaagggtgttacgggcaggtg
tgtgtgggggagcagggatatgtggtgcggtgggattactcctacagctcctggaccctc
ttcacctgtgagatagagatgctgctgcatgtggtctccactgcagatgtgttggcccat
tgtgagagagtgaagcccatactggaccttgtccataaaatcatcagtactgactggacg
gtttctgactgcttgctgcctctaacttcacgaatctacatgctgcttcagaggttgacg
tctgtcataaaccccccagtggatgtgatcgcttcctgtgtcaactgcctcattgttctc
gctacacggcaacctgcaaaggtttggtccagcctgcagcacacggggttcctgcccttt
gcatccgtccccctaacgaccatggcacagaccataagcgccgagggaatgaaagctggt
aactatggcaacctgctggtgctgtttgagcagccccgaggagaatatgccgtgacagtt
gccttcttgagactggtcaccacactcgtcaagggtcaggtgggcagcactcagagcaaa
gggctgattccctgtgtgctcctggtgctgaaggagatgctgccctcgtaccacaagtgg
cgctataacacacacggagtccgagagaagattggttgtctgattttggagttggtccat
gctattctcaacctgagtcctgagggggagtcagagggcagcactcccagtctgcagtct
ctctgtatctacagcctggccaacactgaggcaggtcaggctgtggtcaacatcatgggc
gtcggagtggacaccatcagcgtggtactggcagctcagcccagcagtagtggtagctgt
gaaggtcctgggcaggtgttaattcagacggtgaaattggccttttcagtcaccaataac
gtcatcagactgaaaccgcagtcggacacggtttctcctctggagcaggctctcacacag
cacggtgggcacggcaacaacctgatagcggttttggctaaatatatttaccacaagcac
gatccagcactgccgagactcgccgtccagctgctgaagagactcgcctcggtggctccc
atgtctgtgtatgcgtgtctgggcagcgacgctgcagcaatcagggacgcgttcctcact
cgactgcagagcaagacagtcgacctgcgtattaaagtcaccatcctcgagttcctcact
gttgcagtggaaacacagcctggactcatcgagctcttcctcaacctcgagaccaaagat
ggcagtgaaggggcaaaggagttttctctgggtgagtggagctgtctggccgtggtcctg
gagctgttggactgtgagctgcaggggcaatactggtgtccccctctgttgcagagagct
gcactggcattcctgcacgccctgtggcaggaccgcagagacagcgcactgtctgtgctc
cgcaccaaggagaagttctgggacaatctgaccacgcctctctttgggaccctgccccca
ccgtcagagaccaccgagccgtgtgttttggagtcttgtgcctttgtgatgaagattata
ggccttgagatctactatgttgtcagtggtcagctggagggctctctaaaggcagcgctg
cagcggctgagctcccagcgccggtatgaattctggtctcagtatgtgagggagctggtt
tgtgctgcctgtgagggagaggacggggggatgaggtcactgtcggagtctcagatgctc
atctcggcctggcggaccctgcttatactctccaccagccactctgatgttatgcagctg
aaggaagacgctgttagactgaagctgttcatggatgttctagagggaaccaaagcagca
ttgctgatgcctcagtctgtagcgtgtctgcgtctgggctccatgatggccaccctgctg
ctcatcctgctcaagcaatggaagagtgtgctggtttcagctcctgctctgttgcctcct
ctctctctgatgctggagaatgttctccaagcagatcagcagctgatggagagaaccaaa
gcaaagctcttctcagctctaatatctgccctacacattcagggccttaacggaggagag
attacccagctgccccagctgctactgtgcgtgtgtgagacggtccaggacgaggctctg
gctttgattgacagcacacggcacattacccagaaaagcgacacccaggaagacagcatg
gagacagacacgccgcgcagtgtgcagaaagaccagagagactcggtgtgcgtgttggct
ctgcacctgtctaaagagctgtgtcgggcggatgaggatggtgagcagtggcttcaggtg
atgaggaagctgccggttctgccctcagttctaagcgctctagaactcagcctgcgctcc
aaacagaacctttacttcactgaggctgcgctgcatctgctgctcacactagccagaaca
ccacagggagcagcagcagtggcaggtgctggagtgattcagagtatctgcctccctctg
ctcagtgtgtatgaaggtccagcaaacggagccacacaggcgttctcccgtaagcccctg
gatgcgccttgctggccaggtgtatatcgtctctgtctatctctgatggaaagtctgctc
aagacgctgcgctacaacttcatcaacgaggctctggacttcgtaggtgttcaccaggag
cgtattttacagtgtctgagtgcagtgcggactgtgcagtctttagcgtgtctggatgaa
gcggaccacacggtgggcttcctgctgcagctctccagcttctgcaaagagtggcagttc
cacctcccacaactgctcagagacgtgcaggtgaatctgtgttacctgtgtcagacatgt
acatacctgctccacagcaagaaaatgctacaccactacctccaggcgaagaatggggat
gctctacctcaggggtcccgtccacagcgagttctacagcccacctctaaggagcagcca
ctgagtggagagcgagaggaggcggagtctaaagctttgcaggcggtgcagtgcagcctt
ctgaagattttgagcaaaacactggcaaccttacagcactttacaccagactgctgccag
atactgctggaccagtccatggaccttgcggagtaccgaaccctgtttgtgctgagtttc
accactcctgcctttgactcagatgtcgctccgtcgtttggaaccctgctggccaccatc
aacgtggcgctgagcatgctcggagagattgagaagaaaaaggagccagcagtctcatca
gaggaaacgcaagcacttaagtccctgctgatgttttcgatggagaactgtttctatgtg
ctgatctcgcaggccatgcgctgtctaaaggacccggccgttctgccccgagacaagcag
agagtcaaacaagagctcagctctgaactgagcacgttgttgacgacgctgttccgtttt
ttccgccgtggatccccttcttccccggccagcggcctgctgccctctccccagaccaaa
cccaccaccccaggggcaaaggtcacgcaggagggccaggaacccttcatccagctggtg
caggcctttgtacggcacgtccagcgctag
DBGET
integrated database retrieval system
