KEGG   Colossoma macropomum (tambaqui): 118820407
Entry
118820407         CDS       T09004                                 
Symbol
rfc2
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
cmao  Colossoma macropomum (tambaqui)
Pathway
cmao03030  DNA replication
cmao03410  Base excision repair
cmao03420  Nucleotide excision repair
cmao03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cmao00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    118820407 (rfc2)
   03410 Base excision repair
    118820407 (rfc2)
   03420 Nucleotide excision repair
    118820407 (rfc2)
   03430 Mismatch repair
    118820407 (rfc2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cmao03032]
    118820407 (rfc2)
   03036 Chromosome and associated proteins [BR:cmao03036]
    118820407 (rfc2)
   03400 DNA repair and recombination proteins [BR:cmao03400]
    118820407 (rfc2)
DNA replication proteins [BR:cmao03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    118820407 (rfc2)
  DNA Replication Termination Factors
   ELG1-RFC complex
    118820407 (rfc2)
Chromosome and associated proteins [BR:cmao03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    118820407 (rfc2)
DNA repair and recombination proteins [BR:cmao03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     118820407 (rfc2)
  Check point factors
   HRAD17(Rad24)-RFC complex
    118820407 (rfc2)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_22 AAA_14 RCF1-5-like_lid AAA_16 Mg_chelatase Viral_helicase1 AAA_24 AAA_11 Rad17 RuvB_N AAA_assoc_2 AAA_19 nSTAND3 AAA_18 MipZ AAA_5 ABC_tran AAA_28 DNAX_ATPase_lid AAA_23 AAA_25 AAA_30 MeaB NTPase_1 RNA_helicase SLFN-g3_helicase FtsK_SpoIIIE DUF815
Other DBs
NCBI-GeneID: 118820407
NCBI-ProteinID: XP_036444623
LinkDB
Position
Unknown
AA seq 353 aa
MDVDMKEADGEQIQPDTQNKKEDVVSKPATSTYELPWVEKYRPMKLNEIVGNEETVSRLE
VFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAMKDAVLELNASNDRGIDVVRNKIK
MFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPI
QSRCAVLRYSKLRDEQIMMRLMEVVEKENLHTTNDGLEAIIFTAQGDMRQALNNLQSTNS
GFGFINSENVFKVCDEPHPLLVKNMLEHCVNANIDEAYKIIEQLWSLGYSPEDIIGNIFR
VCKTFQMPEYLKLEYIKEIGYTHMKIAEGVNSLLQMAGLLGRLCSKTAAPDAS
NT seq 1062 nt   +upstreamnt  +downstreamnt
atggacgtggatatgaaagaggctgatggcgaacaaatccagccagacacgcagaataaa
aaggaagatgttgtctcaaagccagcgacgagtacttacgaactaccatgggttgaaaaa
tacagacctatgaagttgaatgaaattgttggaaatgaggaaactgtcagcagactggag
gtgtttgccagggagggcaatgtacccaacataatcattgctggtcccccaggcactgga
aaaacaacaagcattttatgtttggcaagagctcttcttggcccagcaatgaaggatgct
gtgcttgaactgaatgcctcaaatgacagaggtatcgatgttgtcagaaacaagataaag
atgtttgcccagcaaaaagttactctccccaaagggcgtcacaaaatcataattctggat
gaagctgacagcatgacagatggagctcagcaggctctgagaagaactatggagatctat
tcaaagaccactagatttgccctggcctgcaatgcgtcagacaagattatcgagcccatt
cagtcccgctgtgcagtgctgcgctacagtaagttgagggatgagcagatcatgatgcgg
ctgatggaggtggtggagaaagagaacctgcacaccaccaatgatggcttggaggccatt
atcttcactgcccaaggagatatgagacaggcactgaacaacttgcagtctacaaattct
ggatttggttttatcaacagtgaaaatgtattcaaggtatgtgatgagccacaccctttg
ctggtaaaaaacatgctcgaacactgtgtcaacgctaatatcgacgaagcttacaagatc
attgaacagctttggtctcttggctattctcctgaggacataatagggaacatcttcaga
gtgtgtaaaaccttccaaatgccagagtacttgaaactggagtatatcaaggagattggc
tacacacacatgaagatagcggaaggagtaaactcccttttgcaaatggctggactccta
gggcgactctgcagtaagactgctgcacccgatgccagctaa

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