Colossoma macropomum (tambaqui): 118821132
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Entry
118821132 CDS
T09004
Symbol
ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118821132 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmao03041
]
118821132 (ddx5)
03009 Ribosome biogenesis [BR:
cmao03009
]
118821132 (ddx5)
Enzymes [BR:
cmao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118821132 (ddx5)
Spliceosome [BR:
cmao03041
]
Complex A
U1 snRNP components
U1 related factors
118821132 (ddx5)
Complex B
118821132 (ddx5)
Ribosome biogenesis [BR:
cmao03009
]
Eukaryotic type
Pre-60S particles
Helicases
118821132 (ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
118821132
NCBI-ProteinID:
XP_036445474
LinkDB
All DBs
Position
Unknown
AA seq
623 aa
AA seq
DB search
MPGYSDRDRSRDRNYGNGPPRFGGSRGGPPQGKKFGNPGDRLRKKHWNLDELPKFEKNFY
QEHPDVARRSSQEVEQYRRSKEITVKGRDCPKPVMRFHEASFPSYVMDVINKQNWTDPTP
IQAQGWPLALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTREL
AQQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNL
RRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYVQ
INVGALQLSANHNILQIVDVCNDGEKEDKLVRLLEEIMSEKENKTIIFVETKRRCDDLTR
RMRRDGWPAMGIHGDKSQQERDWVLNEFKFGKAPILIATDVASRGLDVEDVKFVINYDYP
NNSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQAHDLVSVLREANQAINPKLIQMAEDRG
GRSRGGRGGGYRDDRRDHYSGGRRDFNSYGQDSRSNDRGYDSGPKKVFGNKAQNGGSYGS
SNYNGNSNNGFNGAYNNGQSSFGGNQSGGFGNQGFQNQQFGANQGGIQNGMSHSQFPFNP
QQQPPQPMPQQMVPFSMPPPAFP
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatattcagacagagaccgcagccgcgacagaaattatggcaatggaccacca
cggtttggagggagtcgcggtgggcccccacaaggcaagaagtttggaaatccaggggac
aggctgcggaagaaacattggaaccttgatgagctgcctaaattcgagaagaacttttat
caagaacatcctgatgtggcccgaaggtcctcacaagaagttgaacagtacaggagaagc
aaggagataacggtgaaggggagagactgccccaaacctgttatgaggtttcatgaggcc
agctttccatcttatgtaatggatgtgatcaataaacagaactggactgatccaactcct
atccaagctcaggggtggccactggcattaagtggcaaagatatggttggcattgcccag
acaggttctgggaaaacactttcgtatttgcttcctgctattgtgcacataaaccaccag
cccttcctggagcgtggagatggaccaatttgtctggtactggcccccactcgtgagcta
gcccaacaggtccagcaggtggcagcagagtatggcagagcctcccgtctcaagtccacc
tgcatctatggaggagctccaaaaggaccacaaatccgggacctggagaggggggttgag
atctgcattgccaccccaggcaggcttattgacttcctggaagctggcaagacgaatctg
cgcaggtgcacatatctagtcctggatgaggctgacagaatgctggatatgggctttgaa
ccccaaatccgcaaaatcgtcgatcagatcaggcctgacaggcagacactcatgtggagt
gctacctggcccaaagaggtgcgtcagctggctgaagacttcttgaaggactacgtccag
atcaatgtgggtgcactgcagctcagcgccaaccacaacatcctacagatcgttgatgtt
tgcaatgatggagaaaaggaggacaaactggtgcgtctgctggaggaaatcatgagtgag
aaggagaacaagactatcatctttgtggagaccaagaggaggtgcgatgacctcaccagg
agaatgcgcagggatgggtggcctgcaatgggtatacatggagacaaaagccagcaggag
agagactgggtgcttaatgaattcaagtttggcaaagctcccatccttattgctactgat
gtggcctcaagaggtctagatgtcgaggacgtcaaattcgtcattaactatgactacccc
aacaactctgaggactacatccaccgaattgggcgcacagctcgcagccagaaaacgggg
acggcctacacattcttcacgcccaataacatgaagcaggcgcacgacctagtctctgtc
ctccgtgaggcgaatcaggccattaaccccaaactcatccagatggcggaagacagagga
ggtcgttcaaggggcggtcgaggtggcgggtatagagatgaccgcagagatcactactct
ggaggcagacgggatttcaacagttacggccaggacagccgcagtaatgaccgtggttat
gacagtggaccaaagaaggtctttggcaacaaggcccaaaatgggggatcttatgggtct
agcaactacaatggtaacagcaataatggctttaatggggcttacaacaatggacagtcc
agctttggtggtaaccagtctggtggctttggaaaccagggtttccagaaccagcagttt
ggggccaaccaaggtggcattcagaatggaatgagccacagccaattccccttcaaccct
cagcagcagcccccacagcctatgccccagcagatggtgcccttctctatgccccctcct
gccttcccctag
DBGET
integrated database retrieval system
