Colossoma macropomum (tambaqui): 118821266
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Entry
118821266 CDS
T09004
Symbol
pold1
Name
(RefSeq) DNA polymerase delta catalytic subunit isoform X1
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03030
DNA replication
cmao03410
Base excision repair
cmao03420
Nucleotide excision repair
cmao03430
Mismatch repair
cmao03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
118821266 (pold1)
03410 Base excision repair
118821266 (pold1)
03420 Nucleotide excision repair
118821266 (pold1)
03430 Mismatch repair
118821266 (pold1)
03440 Homologous recombination
118821266 (pold1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cmao03032
]
118821266 (pold1)
03400 DNA repair and recombination proteins [BR:
cmao03400
]
118821266 (pold1)
Enzymes [BR:
cmao01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
118821266 (pold1)
DNA replication proteins [BR:
cmao03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
118821266 (pold1)
DNA repair and recombination proteins [BR:
cmao03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
118821266 (pold1)
MMR (mismatch excision repair)
DNA polymerase delta complex
118821266 (pold1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
DNA_pol_B_exo2
DNA_pol_B_2
divDNApol
Motif
Other DBs
NCBI-GeneID:
118821266
NCBI-ProteinID:
XP_036445697
LinkDB
All DBs
Position
Unknown
AA seq
1179 aa
AA seq
DB search
MFFGIGSFCFTLYFCTSAQVEHGACRFLIVSQSPRVPPVTQFCRENGNRALGGRSVRECS
RSGGRFSPDKELLKMDIKRRNGGPMSGGASQAKRGKMGTEWEDGPSQFEEELALFDDMDM
EAESGEGQAGHDVIPVGELFSADLNPRWRRPTAPPLQPDKDTLIFQQIDLDYYLGSAVAG
MPGQVQGKVPVVRMFGVTDSGNSVCCHVHGFAPYFYVPAPAGFTHSHLVEFQKELNSAVL
KDMRSNKDNISVTVLAVDLTRKESMYGYHGNHPLAFLRITMAMPRLVAPAKRILEQGFKF
ANFSIQSYSAYEANIDFEIRFMVDSDVVGCCWIELPKGKYKLREEKNAKGTDSDTPGKVS
LCQYEVDVGWTDLISHPAEGDWQRIAPLRVLSFDIECAGRKGVFPEAEVDPVIQIASMVQ
RQGEKEPFIRTVFTLQSCASIVGSQILCFTQEKQLLQSWAEFVRTVDPDIITGYNIQNFD
LPYLLNRAAALKVNFFPYLGRVRGIKSVLKDSSFQSKQMGRRENKTVNMEGRVQFDLLQV
LLRDYKLRSYTLNAVSFHFLQEQKEDVQHSIITDLQNGNEQTRRRLAVYCLKDAYLPLRL
LQKLMCVINYMEMARVTGVPLTYLLSRGQQIKVVSQLLRQAMKQDLVMPVVKTEGGEDYT
GATVIEPEKGYYSVPIATLDFSSLYPSIMMAHNLCYTTLLQKGQVDKLGLSAEDFIKTPT
GDLFVKSSVRKGLLPEILENLLSARKRAKAELKKETDPFKKQVLDGRQLALKISANSVYG
FTGAQVGKLPCLEISQSVTGFGRQMIEQTKQLVESKYTIANGYQADAKVVYGDTDSVMVK
LGVDTVQEAMTLGKEAADWVSSHFIPPIKLEFEKVYYPYLLINKKRYAGLYFSSSAEHHD
KMDCKGIETVRRDNCPLVANLINTCLQKILIERDPDGAVGHAKEVISDLLCNRIDISQLV
ITKELTRTAQEYAGKQAHVELAERMRKRDAGSAPNLGDRVPYVIIKAAKGVAAYMKSEDP
IYVLENNIPIDTQYYLEQQLSKPLLRIFEPILGETKAESVLLKGDHTRCKTVLTSRVGGL
MAFAQKRSTCIGCRAVLKTDAAVCDFCKKKESELYQKEIAHLSALEEKFSRLWTQCQRCQ
GSLHEDVLCTSRDCPIFYMRKKVQKDLGDQEKLVSRFGW
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgttttttggtattggtagtttttgttttaccttgtacttttgtacttctgctcaagtt
gaacatggcgcttgtcgcttcctcattgtgagccaatcacctcgcgtgccccctgtcacg
caattttgccgggaaaacggaaatcgcgcgctggggggacgttcagtgcgcgaatgcagc
cgaagtggcgggagattcagtccggataaagaactgctaaagatggatattaagagacgg
aatggcgggcctatgtcaggtggagcctcccaggctaagaggggaaaaatgggtactgag
tgggaggatggcccatcccagtttgaggaagagcttgccctatttgatgatatggacatg
gaggcggagtcaggggaagggcaggcgggtcatgatgtaataccagtgggtgaattgttt
tctgctgatctaaaccctcgctggcgtcggcctactgcgcctccactccagcctgacaaa
gacacactcatcttccagcagatagacttggactattacctgggctctgcggtggctggg
atgccaggacaggtccaggggaaggttccagtggtccgtatgtttggagtgactgacagt
ggcaacagtgtctgctgtcatgtgcatggatttgcaccttatttctatgtccctgctcca
gctggctttactcattctcacctggttgagtttcagaaggagctgaattcagctgtgttg
aaggacatgcgctccaataaagacaacatatcagtcactgttctggcggtggatcttacc
cgcaaagaaagtatgtacggttaccatggaaaccatcctttggccttcctgcggatcacc
atggcgatgccacgtctggttgctcctgcgaaacgtatcctggaacagggcttcaagttt
gcaaacttctccatccagagctactctgcctatgaggccaacattgactttgagatcagg
ttcatggtagacagtgatgtggtgggctgctgctggattgagctgcctaaagggaagtac
aaactgagggaggagaaaaatgctaaagggacggactcggacactccgggcaaggtttct
ctgtgtcagtatgaggtggatgtgggctggacagatttgatcagtcacccagcggaggga
gactggcagagaattgcgcctctcagggttctcagctttgacattgagtgtgctggcagg
aaaggtgtgtttccagaggctgaggtggaccctgtgattcaaattgcctctatggtgcag
cgtcaaggagagaaggagccctttatccgtactgtttttactttacagagctgtgctagt
atagtgggttctcagattctctgcttcactcaagagaagcaactactacagagctgggca
gagtttgtgaggacagtagatcctgatatcattacaggatacaatattcaaaactttgac
ctgccgtatctactgaacagagctgccgctctgaaggtaaatttcttcccctatctgggt
cgagtaaggggcattaagtctgttctgaaggactccagcttccagagcaagcagatgggt
cgccgagaaaacaaaactgtcaacatggagggaagagtgcagtttgaccttttgcaggta
ctgttgagggactataaactgcgctcatatactctcaacgctgtcagctttcacttcctg
caggagcagaaagaggatgttcagcactccatcatcactgacctacagaatgggaatgag
cagacgaggcggcgtttggcagtttactgtctgaaggatgcatacttgccactgcgcttg
ctgcagaaattgatgtgtgtaattaactacatggagatggccagagtgactggtgtgcct
cttacctacctgctgtcccgtggccagcagattaaagtagtgtcacagctactgcgacag
gctatgaagcaggacttggttatgccagtagtcaagacagagggaggggaagattacact
ggagccacggtcattgaaccagagaaagggtactacagcgttcctatagccactctggat
ttctcctcactgtacccatcaattatgatggctcataatctctgctacactaccttgcta
cagaagggacaggtggacaaactgggtctctctgcagaggacttcattaagactcctaca
ggagatctgtttgttaaaagctcggtgaggaaaggccttctgcctgagatcctggagaac
ctactgagtgccaggaagagggcgaaggctgagctgaagaaagagactgacccgtttaag
aagcaggtgctggacggcaggcagcttgctctgaagattagcgcaaactctgtgtatggt
ttcactggggcacaagtgggcaaactgccctgcctggaaatctcacagagcgtaacgggc
tttggcagacaaatgattgaacagactaaacaacttgtggaatccaagtacaccattgct
aacggatatcaggcggatgccaaggtcgtctatggtgacacagactctgtcatggtgaaa
ctgggtgtggacacagtacaggaagcaatgactctgggaaaggaggcagctgactgggtg
tcctctcactttattccaccaattaaactagagtttgagaaggtgtactacccctacctg
ctgatcaataagaagaggtatgccgggctgtatttctcatccagtgcagaacatcatgat
aaaatggactgtaaggggatagaaactgtcaggcgagacaattgccccctagtggccaac
ctcatcaacacatgcctccaaaagatcctcatagagagagatcctgatggagctgtaggc
catgcgaaagaggtgatctcagatctactatgtaaccggattgacatcagtcagctggtc
attaccaaggaactgacacgcacagcgcaggagtatgcaggcaaacaggcccatgtcgaa
ctcgctgagaggatgcgcaagcgagatgcaggcagtgctcctaatcttggcgatcgagtt
ccatacgtcatcattaaggcagccaaaggagtagcagcatatatgaagtcagaggacccc
atttatgtgctggagaacaacatacctattgacacccagtactacctggagcagcagctg
tctaaacctctactgcgcatctttgagcccatactgggagagactaaggctgagagtgta
ttactcaagggagatcacacgcgctgtaagactgttctgacctccagggtgggtggcctc
atggcctttgcccagaaacgtagcacatgcatcggctgcagagctgttctcaaaacagat
gctgctgtctgtgatttctgcaagaagaaagagtcagagctctatcaaaaagagattgct
catctgtcagctctggaggagaaattctctcggctgtggactcagtgtcagcgctgccaa
ggatccctgcatgaagatgtgctatgtactagccgagactgtcccatattctacatgagg
aagaaggttcagaaagacctcggcgatcaagagaagcttgtgtctcgttttggctggtga
DBGET
integrated database retrieval system
