Colossoma macropomum (tambaqui): 118821987
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Entry
118821987 CDS
T09004
Symbol
hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118821987 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmao03019
]
118821987 (hbs1l)
Messenger RNA biogenesis [BR:
cmao03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
118821987 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
GTP_EFTU_D4
Motif
Other DBs
NCBI-GeneID:
118821987
NCBI-ProteinID:
XP_036446615
LinkDB
All DBs
Position
Unknown
AA seq
682 aa
AA seq
DB search
MSRHRNVRGYNYDEDFEDDDVYGQSVDDDYCISPATAAQFIYSRQDSRQARQVEPLEEEE
HEEEEEMPTSPTVTHMLDPLEQGRLYSCLDQMRTVLGDSVPDSTLTEAALKYDCDPHRAL
DSILSAENSNMQTTTAPKTNTQLELTTAPPPQKAKPREAPESRLESEVVPKVARMTVSGK
KQTMGFDVPSSDENGVTPSARRGPSPEVMTVPVLETPSKPASVVEDSVTPTPPRSASKSK
QQLNIRAELEQRQGGKPLLNLVVIGHVDAGKSTLMGHLLYLLGNVNKRTMHKYEQEAKKA
GKASFAYAWVLDETGEERDRGVTMDVGMTKFETNSKVVTLMDAPGHKDFIPNMITGAAQA
DVAVLVVDASRGEFEAGFEAGGQTREHALLVRSLGVTQLAVAVNKMDQVNWQQERFQEIT
SKLGHFLKLAGFKESDVYYVPTSGLSGENLTTRSKEADLTAWYTGPCLLEQIDSFKAPQR
SVEKPFRLCVSDVFKDQGSGFCVTGKIEAGFIQTGDKVLAMPPNETCTVKGITLHDEPLD
WAAAGDHVSLTVTGMDIIKINVGCVFCDPKEPIKACSRFRARILLFNIEVPITQGFPVLL
HYQTVSEPATIRKLVSVLHKNSGEVLKKKPKCLSKGQNAVVEIQTQRPVALELYKDFKEL
GRFMLRYVGSTIAAGVVTEIKE
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgccataggaatgtccgaggttataactacgatgaagattttgaggatgacgac
gtttatggacaatcagtggacgatgattactgcatctcaccagctacagctgctcagttt
atttactcacgtcaggactcgaggcaagcacggcaggtagagccactggaggaggaggaa
catgaagaagaagaggagatgccaacctcacccacggttacgcatatgctcgacccttta
gaacaaggtcgtctgtactcctgtttggaccagatgagaacagtgctcggagactcagta
cctgactccactctgaccgaggccgcgttgaagtatgactgtgatcctcacagagctctg
gactccattctgtccgcagaaaacagcaacatgcaaacaacaactgcacccaaaaccaac
actcaactggaactcaccacagcacccccaccacagaaagctaaaccccgtgaggctcct
gagagtcgtctggaatccgaggtagttcctaaggtcgctcgaatgactgtctctggcaag
aagcagaccatgggctttgatgtgccaagctctgatgaaaatggcgttaccccatctgca
cggagaggtccaagcccagaggtgatgacagtccctgtcttggagacaccatctaaacct
gccagtgtagtagaggactcagtgacccctactccaccacgctcagccagcaaaagcaaa
caacagctgaacatccgggcagagctagagcaaaggcagggggggaaaccacttctcaac
ctggttgtcataggtcatgtggatgctggtaagagcactctgatgggtcatctgttatac
ttgttggggaatgtgaataaacggaccatgcacaagtatgagcaggaggcaaagaaagct
ggaaaggcctcttttgcctatgcatgggtactggacgagacaggagaggagagagacaga
ggtgtgaccatggatgtagggatgaccaagtttgagaccaactccaaagttgtgactctg
atggacgcgccaggacacaaagattttattcccaacatgatcactggagcggcacaggca
gatgtagccgttctggtggtggatgccagtcggggggagtttgaagctgggtttgaagca
ggtgggcagacaagagagcatgccctcctagtccgatcgctcggcgtcacacagctcgct
gttgctgtcaacaagatggaccaggtgaactggcagcaggagaggttccaggaaatcacc
tccaaacttggtcattttctgaagctggctgggttcaaggagtctgacgtttattacgtc
ccaaccagtggtctttcaggagagaatctcaccacaaggagcaaagaagctgatctcact
gcctggtatacaggaccatgtctgctggaacagatagactcatttaaagcccctcagaga
tcagtggagaagcccttcagactttgtgtctcagatgtctttaaagatcagggttctggg
ttctgtgtgacgggaaagattgaagctgggttcattcagactggagacaaagtgctggcc
atgccacccaatgagacctgcactgtgaaaggtatcactcttcatgatgaaccactagac
tgggcggctgcaggtgaccacgttagtctgacagtcaccgggatggacatcataaagata
aatgttggttgtgtattctgcgaccctaaggagcccattaaggcctgttctcgtttccgg
gccagaattctgttgttcaacatcgaagtcccaataacacaaggcttccctgttctgtta
cactatcagacagtgagtgagcctgccaccatcagaaaactagtcagtgtgttacataaa
aacagtggggaggttctgaaaaagaaaccaaagtgtttgagtaagggccagaatgctgtg
gtagagatccagacacagaggcctgtggctttggagctctataaggactttaaagaactg
ggccgtttcatgctccgatatgttggctccaccattgctgctggagtggtcacagagatc
aaagagtaa
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