Colossoma macropomum (tambaqui): 118823242
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Entry
118823242 CDS
T09004
Symbol
scaf8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
cmao
Colossoma macropomum (tambaqui)
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmao03021
]
118823242 (scaf8)
03041 Spliceosome [BR:
cmao03041
]
118823242 (scaf8)
Transcription machinery [BR:
cmao03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
118823242 (scaf8)
Spliceosome [BR:
cmao03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
118823242 (scaf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
118823242
NCBI-ProteinID:
XP_036448588
LinkDB
All DBs
Position
Unknown
AA seq
1316 aa
AA seq
DB search
MEAVKAFNGELYSLNEYKPPISKAKMTQITKSAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGQEKDVFAPRFSKNIINTFQNLYRCPSDDKSKIVRVLNLWQKN
SVFKSDIIQPLLDMAAGLPPPSVTPVIASSAVPVNNATPGTPATPATPANIVPSLPDWAS
QISNSDTMAAVAQILQSPQGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQL
TAAAAANTLNPLEQRVSSFNKKLLGQFDFGSESEPSEDSKKDTAASQLPMVSESINSSIF
HQLAEQLQQQNLEQFQKQILEHQQHQQKSMAMESQETIFGPENTAPPAQSNVQPQLQEQE
TKLDDSIDNQQQDMELDEGQDTVDEEIFESEEKKTSGTRSRTRSRSRSRSPKRRRSRSRS
GSRKRKHRKRSRSRSRDRKRKSSRSYSSERRAREREKERQKKGLPPIRSKFLSVCSTTLW
VGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYRARQKLSTGSFKIG
SKVIKIAWALNKGVKQEYKQFWDVDLGVTYIPWEKVKLDDLDGFAEGGMIDQETVNSDWE
AQKNNAEAAKEVQIQPVAAEASAVSSSQSEAFTQPVAMMPVQIPVAQTVPAVGLVPPTFP
VTMAMPPPGFGPPPPFLRAGFNAAQPPPGFMATPGVAQSAVGGGLASAQTSLLQSSMSAA
QENSKDSTFGAIITPTSTIPTSFIPTAVPGAGVFNPAGAQPQQASREKAPSVENVDTPAE
ITLQGMQNAARSGMGLLGMHPSAALSHPLSGQRMPGMLPLDLRPNILQGAGARFPLLMQQ
GLAQQANNLLDASLQAQARARAPFSQMEHFSRTEAAFARTPNPSAAVTDNLDKANNETPP
RSDAGSQQEGDQDYRFPPPEKQSTGLLKTPPLEMRTEPTPVRPPLLERPPRAGMQPESRE
GAGRRDSLPGNFRGESRWGPPRGDFDERDMRGLPTGAPKGFQEDRPNPNFQNRFEMRPGG
PTGGGGPGWNRGGGGGAPFNANMHQDFDDRRRPWERQKDRDDRDFRREMNGNRHSRDHDR
DRERDRERERERDRGRDRNRERERERERDRDRERERERDNDKDKERDRERSGGWTPVQQP
LLPLPKPQSQPLLPLPTPLLNLPPSQLDSQPKPLLPHPPQPELLRPELQQPGRQAEPQPE
AKPQAQQSQPQSPSAPEEVTSNKEKMEDLNVQETVDSKPEMNLIQPKPEPTTEPSRTPSP
SVSKPMSVSTPDEPPKQEECLETPAAPLAVRDSEQIGPKAEAETDPELVKTDTEEA
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgttaaggcgtttaatggcgagctgtactctctgaatgaatacaagcctcca
atctccaaagcgaagatgacccagattaccaagtcagcaattaaagctataaagttctac
aaacatgtggtccaaagtgtggagaaattcattcaaaagtgcaagcctgagtacaaggtc
cctggtctgtacgtcatcgactccattgtccggcagtctcggcaccagtttggccaggag
aaggatgtgtttgctccacgctttagcaagaacatcattaacacctttcagaacctctac
aggtgcccctctgatgacaagagcaaaattgttcgagtcctcaatctgtggcagaaaaac
agtgtattcaaaagtgacatcatccagccccttctggacatggcagcagggctgccaccc
ccgagtgtgactccagtaatcgccagcagtgctgttcctgttaataatgccactcctggc
actcctgcaactcctgccaccccagccaacatagtgcccagtttaccagactgggcctct
cagatctctaactctgacacaatggcagctgtagcccagatcctgcagagccctcaaggc
caacagttgcagcagttggtgcaaagcctacagatgcagcagcagaagcctcagccgtcc
ctgctgcaggctctagatgcaggcctggtggtccagctacaggctctaacagcccagctc
acggccgcagctgcagccaacacactcaaccccctggagcagagagtctcctccttcaac
aagaaactgttgggtcagtttgattttggcagtgagtcagaacccagtgaggactctaaa
aaggacacagcagcttctcagttacccatggtttctgagtctatcaacagctctattttc
catcagttggctgagcagctccagcagcagaaccttgaacagtttcagaagcaaatcctg
gagcaccagcaacatcagcagaagtcgatggccatggagagccaggagacaatatttggt
cctgaaaatactgctcctcctgcacagagcaatgtccaaccacaactccaagaacaggaa
accaaattggatgactccattgacaaccagcaacaggacatggaacttgatgagggacag
gataccgtagacgaggagatcttcgagtcagaagagaagaaaaccagtggtactcgttca
agaacacgttctaggtctcgctccaggtcacctaagaggaggaggtcaaggtcccgctca
ggctctcgaaagcgcaaacaccggaaacggtcacgatcacggtcgagagaccgaaagagg
aaatcctcccgctcctactccagtgagcgacgggcgcgcgagagagaaaaggaacggcag
aagaaaggccttcctcccattcgctctaaatttctcagcgtttgcagcactactttgtgg
gtgggccaagtggacaagaaggccacccagcaagaccttaccaatctttttgaagagttc
ggccagattgaatccatcaatatgattcctcccagaggctgtgcttacatctgcatggtg
cacagacaagatgcctaccgtgcccgacagaaattaagcaccggctcttttaaaattggc
tccaaggttataaagattgcctgggccctcaacaaaggtgtaaaacaagagtataagcag
ttctgggatgtggaccttggagtgacctatatcccctgggagaaggtcaaactggatgac
ctggatggctttgcagaaggaggcatgattgaccaggaaacagtcaacagtgattgggaa
gctcaaaagaacaacgcagaggcggctaaggaggtgcagattcagcctgtggctgctgag
gccagtgcagtcagcagctcacaaagtgaagcctttacacagccagttgccatgatgcct
gtgcagatcccagtggcacagactgttcctgctgtaggcctggtgccgcccaccttccct
gtcaccatggcaatgcccccgccaggctttggtcctccacctcctttcctgagggcgggc
ttcaacgctgcacagcctcctccgggtttcatggcaactccaggggttgctcagtcagct
gttgggggtggacttgcctcagcccaaacatctctgctgcaatcttcaatgtcagcagct
caagaaaacagcaaagactccacgtttggagccataatcactccgacaagcactattcca
acaagtttcatccctacagcagtgccaggggcaggagtctttaaccccgcaggagcacaa
ccccagcaggccagtagagaaaaggctccatctgtggagaatgtagacacacctgctgaa
ataacactacagggaatgcagaatgcagcgcgtagtgggatgggtctgcttggcatgcac
ccttctgcagctctttctcatcctctctctggtcagagaatgcccggtatgctgcccctt
gacctgcgacccaacatccttcaaggagctggggcgcgcttcccgctcctcatgcagcag
ggcctggctcagcaggccaacaaccttctggatgcctcccttcaagcccaggctcgtgct
cgagcacctttctctcaaatggagcactttagccggactgaagctgcttttgcaaggacc
cccaacccctcagctgctgtaacagacaacctggacaaagctaataatgagacccctccc
aggtcagatgctggaagccaacaagaaggcgatcaggactatcgcttcccacccccagaa
aaacagagtacaggcctgctgaaaactcctccgctggagatgcgcacggaacccacccct
gttagacctccactgctggagagaccccctagagctggcatgcaaccagagagccgagaa
ggagctggaagaagagattccctgccaggcaatttcagaggcgaatctcgttggggtcct
ccacgaggagactttgatgagcgtgacatgagaggattgccgaccggagcccccaagggc
ttccaagaggaccgccccaaccccaacttccagaaccgctttgaaatgcgtcctggagga
cccacagggggaggaggcccaggctggaatcgtggaggaggaggaggagcacctttcaat
gccaacatgcaccaggactttgatgaccgccgtcggccctgggaaaggcagaaggaccgc
gatgaccgagacttccgcagggaaatgaatggcaaccggcacagccgggaccatgaccgc
gacagggagcgagacagagagcgggagagggagcgagaccgtggaagagacaggaatcgt
gagcgcgagcgagagcgagagcgggatcgggacagggagagagaaagggagcgggataac
gataaggataaggaaagagacagagagcgcagtggtggctggacaccggttcaacagcct
cttctccctctgccaaagcctcagtctcagcccctgctccctctacccactcccctgctc
aacctgcctccatcacagctcgattcacagcctaaaccgttactaccgcatccacctcaa
ccggaattgcttcgccctgagctgcagcagccaggacggcaagctgagcctcagccggaa
gcaaagccccaggctcaacagtctcaaccccagtcacccagtgccccagaagaggtcaca
agcaacaaagagaaaatggaagacttgaatgtccaggagactgtagactctaaacctgaa
atgaacctcatccagcctaagccagagcccactaccgagccttctcgcaccccctctcct
tctgtttccaagcccatgtcagtcagcaccccagacgagcccccaaaacaagaggaatgc
ctggaaacgcccgctgccccccttgcggttagagacagtgaacagattgggccgaaggca
gaagctgagactgatcctgaactagtgaaaactgacactgaggaagcataa
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