Colossoma macropomum (tambaqui): 118823320
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Entry
118823320 CDS
T09004
Symbol
pabpc4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03015
mRNA surveillance pathway
cmao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118823320 (pabpc4)
09123 Folding, sorting and degradation
03018 RNA degradation
118823320 (pabpc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmao03019
]
118823320 (pabpc4)
03041 Spliceosome [BR:
cmao03041
]
118823320 (pabpc4)
Messenger RNA biogenesis [BR:
cmao03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
118823320 (pabpc4)
mRNA cycle factors
Stress granule specific factors
118823320 (pabpc4)
Spliceosome [BR:
cmao03041
]
Complex C
Other components
Complex C specific factors
118823320 (pabpc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_7
RRM_5
RRM_10
RRM_occluded
RBD_RDR6
DUF6262
POP1_C
Motif
Other DBs
NCBI-GeneID:
118823320
NCBI-ProteinID:
XP_036448734
LinkDB
All DBs
Position
Unknown
AA seq
636 aa
AA seq
DB search
MNAATAGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNF
QQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTF
SAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKER
EAELGAKAKEFTNVYIKNFGEDMDDDRLKDIFDKYGKTLSVKVMTDPTGKSRGFGFVSYE
KHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIK
NLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVG
SKPLYVALAQRKEERKAHLTNQYMQRIAGMRAMPANAIINQFQPTSGYFMPAVPQAQNRT
TYYAPNQLAQMRPNPRWQQQGGRGQGGFQGMPNSLRQPGPRANIRHIGPSGTAQGPRGIP
TGAQRVAGTGQPMGPRPTLGVTTPRAMPPYKYATTVRNTQPQVVQPIALQQAQPAVHVQG
QEPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESHE
SLRSKVEEAVAVLQAHQAKKDATQKVGVSTPTAATS
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcggccactgcggggagctaccccatggcctcgctgtatgtgggcgacctgcac
ccggacatcacggaggccatgctgtacgagaagttcagcccggccggccccgtgctctcc
atccgcgtgtgcagggacatgatcacgcgccgctcgctcggctacgcctacgtcaacttc
cagcagccggcggacgcggagagagctctggacaccatgaacttcgatgtggtgaagggg
aagccgatcaggatcatgtggtcacagagagacccctcactccggaaatcaggagtcgga
aacgtcttcatcaagaacctggacaagtccatcgacaacaaggccctgtacgacaccttc
tcagcattcggaaacatcctgtcctgcaaggtggtgtgtgatgagaatggatcgaaaggc
tacgcattcgtccactttgagacacaggacgctgctgaccgggccatcgagaagatgaat
ggcatgcttctgaacgaccgcaaggtgtttgtggggaggttcaagtccaggaaggaaaga
gaggcagagctgggtgccaaagccaaagaattcaccaacgtctatatcaagaactttggg
gaggatatggacgatgacaggctgaaagatatcttcgataaatatgggaaaactctgagc
gtgaaggtgatgacggatcccacaggaaaatcacgaggcttcggctttgtcagctatgag
aaacacgaggatgctaacaaggcagtggaggagatgaacggcactgagctgaacggtaaa
acagtgttcgtcggtcgcgctcagaagaagatggagagacaagctgagctgaagaggaag
tttgagcagctgaagcaggaaagaatcagcagatatcagggcgtgaatttgtacattaag
aatctggatgacaccattgacgatgagaaactgcgtaaggaattctctccgtttggctcc
atcaccagcgctaaggtgatgcttgaggaaggccgctccaagggtttcggcttcgtgtgc
ttctcctccccggaggaggccaccaaggccgtgacggagatgaatgggcgcatcgtgggc
tccaagccactctacgtggccctggcccagcgcaaagaggagcgaaaagcccacctcacc
aaccagtatatgcagcgcatcgccggcatgagagccatgcccgccaatgccatcatcaac
cagttccagcccaccagcggctacttcatgcccgctgtgccgcaggcccagaacagaacc
acgtattacgcccccaaccagctggcccaaatgagaccgaacccccgctggcagcagcag
gggggtagaggtcagggaggtttccagggcatgcccaactcactgcgccagcctggcccg
cgcgccaacatccgtcacatcggacccagcggcacggcacaaggaccccgcggaatacca
acaggtgcccagagagtggctggtaccggccagccaatgggcccccgtcccaccctgggc
gtgaccacgccccgtgccatgcctccatacaaatatgccaccacagtgagaaacacccag
cctcaagtagtgcagcccattgccttacagcaggctcagcctgcagtccatgtgcagggt
caggagccactgactgcctccatgctggccgcggcccctccacaagagcagaagcagatg
ctgggtgagcgtctcttcccgttgatccaggccatgcaccccagccttgcgggaaagatc
acaggaatgttgctggagattgataactcagagctgctgcacatgctggaatcccacgaa
tctttgcgctccaaggtggaggaggctgtggctgtgcttcaggctcaccaggctaagaaa
gacgccacgcagaaagtaggcgtgagcactcccactgctgctacatcctga
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