Colossoma macropomum (tambaqui): 118823460
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Entry
118823460 CDS
T09004
Symbol
vps39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao04140
Autophagy - animal
cmao04148
Efferocytosis
cmao05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
118823460 (vps39)
04148 Efferocytosis
118823460 (vps39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
118823460 (vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cmao04131
]
118823460 (vps39)
Membrane trafficking [BR:
cmao04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
118823460 (vps39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
WD40_like
Beta-prop_RIG_2nd
UN_NPL4
Motif
Other DBs
NCBI-GeneID:
118823460
NCBI-ProteinID:
XP_036448992
LinkDB
All DBs
Position
Unknown
AA seq
875 aa
AA seq
DB search
MHDAYEPVPILEKLPLQIDCLAAWEDWLLVGTKPGHLLLYRIKKDAGTNRFEVTLEKSNK
NFSKKIQQLFVVSQYKILVSLLENNIHVHDLLTFQQITVVSKAKGATLFACDLQQSSSGE
AKLRMCVAVKKKLQLYYWKDREFHELQGDFAAPDIPKSMAWCENSICVGFKRDYYLIRMD
GRGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGVCTQKCALNWTDIPVAME
HQPPYIIAVLPRYVEIRTFEPRLLVQSVELQRPRFITSAGPNIVYVASNHFVWRLVPVSI
ASQIRQLLQDKQFELALQLAKMKDDSDGDKRQQIHHIQNLYAFNLFCQKRFDDSMQVFAK
LGTDPTHVIGLYPDLLPSDYRKQLHYPNPLPTLSGAELEKAHLALIDYLTQKRSHLVKQL
NDSDPSTTSPLMEGTPTIKSRKKLLQIIDTTLLKCYLHTNVALVSPLLRLENNHCHVEES
EYVLKKAHKYSELIILYEKKGLHQKALQVLLDQSTKANSPLKGHERTVQYLQRLGAENLG
IIFEFSPWVLKICPEDGLKIFTEDLPEVEMLPRDKVLDFLKEGFKELAVPYLEHIIHVWD
ETGPDFHNVLIELYLERVQTLMKEYLNSLPEGVPAVAAGEEEGELGEFRNKLLCFLDISA
HYEPERLISDFPFDGLLEERALLLGRMGKHEQALFIYVHILKNTRMAEEYCHRHYDKSAD
GSRDVYLSLLRMYLSPPDVHCLGPIKMELSEPQANLQAALQVLELHHSKLNTTKAINLLP
ANTQIWEIRVFLESVLEEKAQRKRFDQVLKSLLQAEFLRVQEERIFHQQVKCVITEEKTC
RVCKKKIGNSAFARYPNGVVVHYFCCKDRSVCPTE
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgcgtatgaacccgtccctattttggaaaaactgcccctccagatcgactgc
ctcgcggcctgggaggattggctccttgtggggacaaaaccaggccacctcctcctctac
agaatcaaaaaggatgcaggtacgaacagatttgaagtaacgctagagaaatccaacaag
aacttctcgaagaagatccagcagctgtttgttgtgtcccagtacaagattttggtcagt
ctgttggagaacaacatccatgttcatgacttgctcacattccagcagattactgtagta
tcaaaggccaaaggagccaccctatttgcctgtgacctgcagcagtccagctcaggtgaa
gcaaaattgcggatgtgtgttgctgtcaagaagaaactacagctatattactggaaggac
agggagtttcatgaattgcagggagattttgccgctccagatattccaaagtccatggct
tggtgtgaaaattccatatgtgtgggtttcaagcgtgactactatctgattcggatggat
ggacgtggctcaatcaaagagctgttcccaacagggaagcagctggagccgctggtagcc
cctctggctgacgggaaagtggcggttggtcaggatgatctcacggttgtcctgaatgag
gaaggagtctgcacccagaaatgtgctctcaactggactgacatccctgttgcaatggag
caccagcctccttatatcattgcagtgctgcctcgctatgtggagatccgcacctttgag
cccaggctgctggtgcagagtgtggagctgcagaggccacgattcatcacctctgcaggg
cctaacatagtgtacgttgccagcaaccattttgtctggcgacttgtgccggtctccata
gcaagccaaatccgacagcttctgcaggacaagcagtttgagctggctcttcagctagcg
aaaatgaaggatgactcagatggtgataagaggcagcagattcaccatattcagaaccta
tatgcctttaatctcttctgtcagaagcgctttgatgactccatgcaggtgtttgccaag
cttggcacagatccaactcatgtgattgggctgtatccagaccttctgccctctgactat
cgtaaacagctgcactaccctaaccccctgcctactctttccggagctgagctcgagaag
gcccacctagctctcattgattacctaacacagaaacgcagccatttggtgaagcagctg
aacgactcggacccctccaccacctcccctctaatggaaggcacacctacaatcaaaagt
cgcaagaagctccttcagatcatagacaccaccctgctcaaatgctacctccataccaat
gtcgccttagtgtcgcctctcctgcgcctggagaacaaccactgtcacgtagaggagagt
gagtatgtgctgaagaaagcccacaaatacagcgagctcatcatcctttatgagaagaag
ggcttgcatcagaaagccctgcaggtcctcctggatcaatccactaaagccaactcccca
ctgaagggtcatgagaggacagtgcagtatctccagaggctaggggccgagaatctgggc
atcatttttgagttctctccttgggtgctgaagatttgcccagaggatggtctgaagatt
ttcacagaggacctgccagaggtagaaatgctgccaagagacaaggtgttggacttcctg
aaggagggctttaaagagctggccgtgccatatctggagcacattatccacgtgtgggat
gaaacaggccctgatttccacaatgtgcttatcgagctctacctggagagagtgcagacc
ctgatgaaggagtatctcaactcactgcctgaaggtgttccagctgtagctgcgggggaa
gaggagggtgagcttggagagttccggaataagctcctgtgtttcttggatatttcagcc
cattatgaaccagagaggctcatcagtgacttcccatttgacggtctgctggaggaacga
gctctgctcttgggccggatgggcaaacacgagcaggccctcttcatctatgtgcatata
ctgaagaacacgcgtatggcagaggagtattgtcacaggcattatgacaaatcagcagat
ggaagtagagatgtgtacctgtctctgctgcgcatgtacttgtctcctccagacgtgcat
tgccttggtcccattaagatggagctgtctgagccacaggctaatctccaggctgccctc
caggtccttgagctgcaccatagcaagctcaacactaccaaggccataaatctgctccca
gcgaacactcagatatgggagatccgtgtgtttctagagagtgttttggaggagaaagct
cagaggaaacggtttgaccaggtcctcaagagcctgcttcaggccgagttcttgcgggtc
caggaggagaggatctttcatcaacaggtcaagtgtgttattactgaggagaagacctgc
cgggtgtgcaagaaaaaaattgggaacagtgcctttgccaggtatccaaatggtgtagtg
gtccattacttctgctgtaaggatcgcagtgtgtgtcccacagaatag
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