Colossoma macropomum (tambaqui): 118824479
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Entry
118824479 CDS
T09004
Symbol
chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
cmao
Colossoma macropomum (tambaqui)
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmao03021
]
118824479 (chd1)
03036 Chromosome and associated proteins [BR:
cmao03036
]
118824479 (chd1)
Transcription machinery [BR:
cmao03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
118824479 (chd1)
Chromosome and associated proteins [BR:
cmao03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
118824479 (chd1)
SLIK complex
118824479 (chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
HDA2-3
DEAD
CHDCT2
Motif
Other DBs
NCBI-GeneID:
118824479
NCBI-ProteinID:
XP_036450547
LinkDB
All DBs
Position
Unknown
AA seq
1813 aa
AA seq
DB search
MDGRSEDESVSNSSGESSNSDDESGSGSGSGSGSGSSSSSSSSSSSQSGSSDSGSGSDSG
SQSDSESEKSKGKNDQDSNPAKIDTSEFWKSNPSILAVQRSAMLRKQQLQQQQQRQQSSS
NSDSDEESSSSDDSDDDSSRKKKSKGSSDSDSGSGSGSGSGSDSSDSSAEEEENSEESVS
DYEPSHKVKSRKPPNKANARNGKKSKAPKKKASGSSSEDEDDYKKALAGPRRQATVNVSY
KEDEELKTDSDDLVEVCGEDVPPPEEDEFETLERVMAMRIGRKGATGATTTVYAVEADGD
PNANFNPNKQPGDVQYLIKWKGWSHIHNTWETEETLKLQNVRGMKKLDNFKKKEQEKKKW
LKTASPEDVEYLNCQQELMDDLHSQYQLVERIIGHSNQKSAAGYPDYLCKWQGLPYSECS
WEDGALIARKFQKCIDDYMSRNQSKTIPSRDCKVLKQRPRFMPMKKQPHYIGGDGLELRD
YQLDGLNWMAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLT
SWHREINLWAPQMNVVVYLGDINSRTMIRTHEWMHPQTKRLKLNILLTTYEILLKDKSFL
GNVSWAFIGVDEAHRLKNDDSLLYKTMIEFRSNHRLLITGTPLQNSLKELWSLLHFIMPE
KFHSWELFEEEHGKGRDSGYTSLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMSAMQK
QYYKWILTRNYKALSKGMKGSTSGFLNIMMELKKCCNHCYLIKPPEDNDFYNKAEALQHL
IRSSGKLVLLDKLLVRLKERGHRVLIFSQMVRMLDILAEYLKSRQFLFQRLDGSIKGEMR
KQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQ
KRQVNIYRLVTKGSVEEDIIERAKKKMVLDHLVIQRMDTTGKTVLHTGAAPSSSSTPFNK
EELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENDPGPSTVGEELLSQFKVA
NFSMMEEEEIDMDADGNQKNWDDIIPEEQRRRMEEEERQKELAEIYLLPRMRNCAKQISF
NGNEGRRSRNRRYSGSDSDSASDRKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFG
GPLERLDAIARDAELVDKSEHDLRRLAETVHNGCLKTLRENPCGPEKTSGGRRGKVKGPT
FRISGVQVNAKLVISHEEELAPLHKAIPADPEERKRYTLPCHAKAAHFDIEWGKEDDSSL
LIGIYEYGYGSWEMIKMDPDLNLTHKLLPDDPDKKPQAKQLQTRADYLIKLLSKDLAKKE
AQRQTGTANSRKRKPRGKKNKAVKPKMDEVTNSLSSAAPSDKSSEDEDEKEEEKDAPPAK
PAPGRKGRASDRVVKEEEEEELEPEAHVKEPEEKETKEKEVKKEIKKEKKEEGRESKEKK
EPKEKKETKPVEPVHKVEESISEKTPELKAEVRDKNKKADTPVHITAGGETVPVSEESEE
LDQKTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITDCVKEYTNP
EQIKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQENAQTADQNTSTVNTQSYKHADI
ERLKDSQQDESSRDSYSSDRHHSASRSHEQSKERQSSDSYRKGSDSRKRPYPSFSNGKDH
RERERDHYRERQDSRYYSDSKHRKLDDHRSSRDHWSDSSSKDRLHSEHRSQPDHRSHSEH
RSSSDYSHHKPSRDYRYHSDWQMEHRASGSGPRSPRDQRSPYDSRSPLGHRSPFEYSSDH
KSTPEQVWSSRKT
NT seq
5442 nt
NT seq
+upstream
nt +downstream
nt
atggatggccgcagtgaagatgaaagtgtgagcaacagtagtggagagtccagtaactct
gatgatgagtctggatctgggtccgggtcgggttctggctccggctccagctccagcagc
agtagctccagcagcagccagtcaggaagcagcgactcaggaagtggctcagactcgggc
agccaatctgactctgagtctgagaaatccaaggggaagaatgatcaggacagcaaccct
gccaagattgatacatcagaattttggaagtctaacccaagtatcctggcagtgcagagg
tcagccatgctcaggaagcagcagctccagcagcagcagcaacggcaacagagctcctca
aacagtgactccgatgaggagtcctccagcagtgatgactcagacgatgactcgtcaagg
aagaaaaagagtaaagggtcctcagactccgattcagggtctggctctgggtctggttca
gggagcgactcttctgattcttcagctgaggaagaggagaacagtgaagagtccgtttca
gactatgagcccagccacaaagttaaaagcagaaaaccacctaacaaggccaacgccaga
aatgggaaaaagagcaaggctccaaaaaagaaagcctcaggctcttcatcagaagatgag
gatgactataagaaggctctggcaggtcctcgccggcaggccacggtcaacgtgagctac
aaagaggatgaagagctgaagacagactcggatgatctggtggaagtgtgtggggaggat
gtgcccccacctgaggaggacgaatttgagaccctggagagagtgatggccatgagaata
ggacggaaaggggctactggagccactaccacagtttatgctgttgaagctgatggggac
cccaacgccaacttcaacccaaacaagcagccaggagatgtgcagtaccttatcaaatgg
aagggatggtcacacattcacaatacgtgggagactgaggagacactgaagctccaaaat
gtgaggggcatgaagaaactggacaacttcaaaaagaaggagcaggaaaaaaagaagtgg
ctcaaaacggcttcacctgaagatgtggaataccttaactgccagcaggaactcatggat
gacttgcattcacagtatcaactcgtggagaggattattggtcattcaaatcagaagtca
gcagcaggctacccagactatttgtgcaaatggcaagggcttccttactcggaatgcagc
tgggaagatggggcacttattgctaggaagttccagaagtgcatagatgactacatgagc
cggaaccagtccaaaacgatcccctccagagactgcaaggttttaaagcagaggccgcgg
tttatgcctatgaagaaacagcctcattatattggcggagatggacttgagcttagggac
taccagctggacggcttgaattggatggcccattcttggtgcaagggaaacagctgtatt
ctagcggatgagatgggcctggggaagaccattcagaccatctcttttctgaactacttg
tttcacgagcaccagctctatggacctttcctgctggtagtgccattgtccaccctcacc
tcctggcacagggagataaacctctgggctccacagatgaatgttgttgtctacctgggg
gatataaacagtaggaccatgatccgaactcatgaatggatgcatccgcagaccaagcga
ctaaagttaaatattctcctcactacatatgaaattctcctgaaagataagtcttttctg
gggaatgtgagctgggctttcattggagtcgacgaggcgcacaggctgaagaatgacgat
tcacttctgtataagaccatgatagagtttaggtccaaccatcggctcctaatcacagga
acacctctccagaactctcttaaagagctgtggtctctcctccacttcatcatgccagag
aagtttcactcgtgggagctatttgaggaagagcatggtaagggaagagactcaggctac
accagcctgcacaaggagctggagcccttcctgctgcgcagggtcaagaaggatgtggag
aagtcactgcctgccaaggtggagcagatcctcagggtggagatgagcgccatgcagaaa
cagtactacaagtggatcttgacaagaaactacaaggccttgagtaaaggcatgaaaggg
agcacatcagggttcctcaatatcatgatggagctgaagaagtgctgtaaccactgctac
ctcatcaaaccgcctgaggacaatgacttctacaacaaagcagaggccttgcagcatttg
atacgcagtagtgggaagctggtcctgctggacaagctgctggtacggttgaaggaacgt
ggccaccgtgtgctcatcttttcccagatggtccggatgctggacatcctggctgagtac
ctgaagagccgccaattcctgtttcagagattggatggttccattaagggcgagatgagg
aagcaggctttggatcatttcaacgctgaaggctctgaagatttttgtttccttttgtcc
acgcgagcgggtggtctgggtattaacctggcatctgcagatactgtggttatctttgac
tctgactggaatccccagaatgacctgcaggctcaggccagagctcacaggattgggcag
aaacgacaggtaaacatctaccgtctggtgaccaagggctctgtggaggaagatatcatt
gagagagccaagaagaagatggtgctggaccaccttgtaattcagagaatggacaccaca
ggaaagaccgtccttcatactggtgctgctccctccagtagttcaacccctttcaacaag
gaggagctgtctgctattctgaagtttggtgctgaagaactctttaaggagccagaaggg
gaggagcaagagcctcaggaaatggatattgatgaaattctgaagagagcagaaaccagg
gaaaatgatcctggcccatccactgtaggagaagaacttctctctcagttcaaggtggca
aacttctctatgatggaggaggaggagattgacatggatgcagatggcaaccagaagaac
tgggacgacatcatcccagaagagcagcggcggaggatggaggaggaagagaggcagaaa
gagttggcagagatttacttgcttccccgcatgaggaactgtgccaaacagataagcttt
aatggtaatgagggcagacgaagtcggaacagaagatactctggctcagacagtgactct
gcgtcggacagaaagcggcctaagaagcgaggtagacctcgaactattccacgagagaat
attaagggcttcagtgatgctgaaatacggagatttatcaagagttataagaagtttggt
ggtcctttggaaagactggatgctattgcccgggacgctgagctggtggataaatcagag
catgacttgaggcgattggcagagactgttcacaatggctgcctaaaaaccctgagggaa
aacccctgtggaccagagaagacctcaggaggcagacgaggcaaggtgaaaggacccact
ttcaggatctcaggggttcaagtcaatgctaagctagtaatctctcatgaggaggaactg
gctccactgcacaaggccattcctgcagacccagaggagaggaagaggtacacacttcct
tgccatgctaaagcagctcattttgacattgagtggggcaaagaggatgactccagcctt
cttattgggatttatgagtacggctatgggagctgggaaatgattaagatggatccagac
ctcaacctcacccataagctcttaccagatgatcctgataagaagccacaggccaaacag
ctccagacacgagccgactacctcatcaaattgctcagtaaggaccttgcgaagaaggag
gcccaaaggcaaaccggcacggcaaattcacgaaagaggaagccacgagggaagaagaac
aaagctgtgaaaccgaagatggacgaggtgaccaacagtctgtcttctgctgcaccctca
gacaaaagctcagaggacgaagacgaaaaagaagaagaaaaggatgcaccccctgccaag
ccagccccaggtagaaagggacgggcctctgatcgagtggtaaaggaggaggaagaggaa
gaactggagccagaagcacatgtcaaagagccagaggagaaggaaacgaaagagaaggag
gtaaagaaagagatcaaaaaggagaaaaaggaggaaggccgtgagagcaaagagaaaaag
gagccaaaggagaaaaaggagaccaagcctgtggagccggtgcacaaagtggaggagtct
atttcagagaagactccggagctgaaagctgaagtccgggacaagaataagaaggctgac
actccagtccacatcacagcagggggagagactgttccagtctctgaggagtccgaggaa
cttgaccagaagactttcagtgtgtgtaaggagcgcatgcggccggtaaaggcagctttg
aagcaactggaccgtcctgagaaaggtctttcagagcgtgaacagctggagcacactcgc
cagtgcctgatcaaaatcggagaccacatcacagactgtgtaaaagaatacaccaacccc
gaacagatcaaacagtggagaaaaaacctttggatatttgtttctaaattcactgaattt
gatgcaagaaaactgcataaattgtataaacatgcaatcaagaaaagacaagaaaacgct
cagacagcggaccagaacactagcactgtaaatacgcaatcttataagcatgcagacatt
gagaggttaaaggactctcagcaggacgagagcagcagagacagctacagctcagaccgg
caccactcagcctcacggagccacgagcagagcaaagagcgccagtccagcgattcgtac
aggaagggctctgacagcagaaaaaggccgtacccctccttcagcaatggcaaagaccac
cgtgagagagaacgagaccactacagagagcgccaggacagcaggtactacagcgacagc
aagcacaggaagctagacgatcatcgctccagtcgagatcattggtcagacagcagttcc
aaggaccgcctgcactcggagcatcgatcccagccggaccaccgctcacactctgagcat
cgatccagctccgactacagccaccacaagccctctcgggactaccgctatcactcagac
tggcaaatggagcaccgggcatcaggcagcgggcctcgttctcctagagaccagcggtca
ccttatgactcacgctcacccttgggccaccgttcgcccttcgagtactcctctgaccac
aagagcacgcccgagcaggtctggagcagtcgtaagacatag
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integrated database retrieval system
