Colossoma macropomum (tambaqui): 118824482
Help
Entry
118824482 CDS
T09004
Symbol
scaf4a
Name
(RefSeq) SR-related and CTD-associated factor 4
KO
K13167
SR-related and CTD-associated factor 4
Organism
cmao
Colossoma macropomum (tambaqui)
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmao03021
]
118824482 (scaf4a)
03041 Spliceosome [BR:
cmao03041
]
118824482 (scaf4a)
Transcription machinery [BR:
cmao03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
118824482 (scaf4a)
Spliceosome [BR:
cmao03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
118824482 (scaf4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
118824482
NCBI-ProteinID:
XP_036450553
LinkDB
All DBs
Position
Unknown
AA seq
1045 aa
AA seq
DB search
MDAVNAFNHELFSLMDSKPPISRAKMISITKSAIKAIKLYKHVVQIVEKFIKKCKPEYKV
PGLYVVDSIVRQSRHQFGADKDVFGPRFTKNITGTFENLCLCPTEDRSKIVRVLNLWQKN
GVFKIEVIQPLLDMAAGSSSSTGAPAVDNGPDAAASPPSPARESESHPVVSANSVQVAVP
QLQNSDAFAAVAQLFQSSQGQQLQQMLQTFQQPGKPQSPAIENNMMASLQMQTPSVQPPT
SLAPCPPHAPQPVEKKATFDKKLLDRFDYDDEPEGGEESKKEETPSVQPAFGFPEGVQQA
QQVPASFPPQANQMQHFQQHMMGMTQDQQVLPPNGQLQNFSRMPPQPYPGMMPPMGQPPT
AVHPGFPGAFPPQNDSFSQLMAGQHQEASMDVDTSSRQHPDGRRSRSRSGSRSPKRRRSR
SNSRSRRSRHRRSRSRSRERRRHSPRSRSQERRERERERERRQKGLPPIKPDTLSVCSTT
LWVGQLDKRTQQQDVACLLEEFGQIESINMIPPRGCAYIVMVHRQDAFRALQKLSRGTYK
VNQKAIKIAWALNKGIKSEFKQYWDVELGVTYIPWSKVRTEDLDDFKEGGVLDTDTLSPE
WKGVQNELENMEEASQNGRAEVGQTDKSPAPLPVQTPPVQPVGAAGAVGVPPHGFPGPMN
IPPPSFPPGVPPPPGPFMRPGFNPMQMPPGFLPPGAMPPIASAGPPLPTSGMAMPPAVSG
SAEEIPGDPAAMGSRMNREGADGFNSVQGMNMQNPPGMNLQNPQGLLGSRPGMMPLQRPP
GMPPPHMQRFPMPPPRPGMPPMPPQMMPPRGPPQMMHREPPPGGFGMPPPHGMRGPFPPP
GPPFMRPSGPRGPDGPEEHEGRPFRGERPAPGRERDRDQDWYGGRRSFGEGRSGDRPEGR
ERFGSWHEEAEQRGGWERQRERRDWRRSPDGERERDRDREREQGRDSEERGKRREREPGT
RERSTRWDRDDRLDRLANVSGQPNGHETLRDSSSSEHSADSAKELAQAKVEAPTPPTEVT
AEAQASEPTAENQQQPAEQTKADES
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgtcaacgcttttaaccacgagttgttctccctgatggactcaaaaccacct
atctccagggcaaagatgatctccattacaaagtctgctataaaagccattaaattatac
aagcatgttgtccaaattgttgagaaattcatcaagaagtgcaaacctgagtacaaagtc
ccagggctctacgttgtggactccatcgtgcggcagtctcgtcatcagtttggtgcagac
aaagacgtgtttggcccccgattcacaaagaacatcacagggacatttgagaacctctgc
ttgtgccccacagaggacaggagtaaaattgtgcgcgttctgaacctgtggcagaagaat
ggggtgtttaagatcgaggttattcagccactcctagacatggctgctggctccagcagc
tcgactggagcaccagctgtagacaacggcccagatgcggctgcatcccctccctcccca
gccagggaatcggagagccacccagtggtgtctgctaactccgtgcaggtagctgtccca
cagctgcagaactctgatgcctttgctgcagtagctcagctcttccagtcctctcaaggc
cagcagctccagcagatgctgcagacgttccagcagccaggaaagccacagtctccagca
atagagaacaacatgatggccagccttcagatgcagaccccttctgtgcagccgcccacc
agtctggctccatgccccccacatgctccgcagcctgtagagaagaaagccacttttgac
aagaaacttcttgaccgttttgattatgacgacgagccagaaggtggggaggagagcaag
aaggaggagacaccctccgtccagcctgcttttggctttcctgaaggagtgcagcaggct
caacaggttccagcatctttccctcctcaagccaatcagatgcagcactttcagcagcat
atgatgggcatgactcaagaccaacaggttctacctccaaatgggcagctccaaaatttc
agccgaatgccccctcagccctatccagggatgatgcctccgatggggcagcctccaact
gcagttcaccctggcttccctggagcctttcctcctcagaatgactccttttcccagctc
atggcggggcagcatcaggaggcctctatggacgtagacacgtcttcaaggcaacaccca
gatggcaggaggtctaggtcacgttcagggtcaaggtctccaaagaggaggcggtcgcgg
tcaaactcccgttctagacgctcgcgacatcgccgttcgcgctctcgatccagagaaagg
cggcgccactctccacgctcccgctctcaggagaggagggagagggaaagagaacgagag
cgcagacagaaaggcctgccgcccatcaaacctgacacactaagtgtgtgcagcactact
ctgtgggtgggacagctggacaagaggacccagcagcaggacgtggcgtgtctcttagag
gagtttggccagatagagtcaataaatatgattcctcctcgaggttgtgcctatattgtt
atggttcatcgacaggatgcctttcgagctctgcagaagcttagcaggggcacttacaaa
gtcaaccaaaaagccattaagattgcctgggctctgaacaaaggcataaaatcagagttc
aagcagtactgggatgtggagcttggcgtcacctacatcccctggtctaaagtcaggaca
gaggacttggacgattttaaagaagggggtgtactggacacagatacactttctccagag
tggaagggagttcagaatgagctggagaacatggaggaggcttcccagaacggcagggct
gaggtgggacagacggacaagagcccagctccgctccctgtgcagactcctcctgtccag
ccagtaggggctgctggtgcggttggtgttccaccccatggtttccctggacccatgaat
atcccaccaccctcatttccacccggggttccaccacctcctggtccatttatgaggcct
ggatttaaccccatgcagatgcctccaggatttctccctcctggtgctatgcctcctatt
gcctctgctgggcctcctcttcccacatcaggaatggccatgccaccagcagtcagcggc
tcagcagaggaaatacctggtgatccagcagccatgggctccaggatgaacagggaaggt
gcagatggattcaactccgttcaagggatgaatatgcagaatcctccagggatgaacctg
caaaatccacaagggcttttgggttcaagaccaggcatgatgcctctccagcgcccacca
gggatgcctcctccacacatgcagcgtttccccatgccacccccacggccgggcatgccc
cccatgccaccacagatgatgcctcccaggggtcctcctcaaatgatgcatcgtgaacct
ccaccaggtggctttggcatgccgcctcctcacggcatgagaggcccctttcctcctccc
gggcctccgttcatgaggcccagtgggccaagagggccggatgggccagaggagcacgag
ggacggccttttaggggcgagcgccctgcgccaggcagggagcgggacagggatcaggat
tggtatggagggcgcaggtcgttcggcgagggccgtagtggggacaggccggaaggtcgg
gaacgtttcgggagctggcacgaagaggcggagcagagaggtgggtgggagaggcagcgg
gaacgcagggactggaggaggagtcctgatggggagagagagcgagacagagaccgagag
cgcgagcaggggagggacagtgaggagcggggcaagcgcagagaaagggagccaggaacg
cgagagagaagcacccgctgggacagggacgacagacttgacagactggctaatgtgagc
ggtcagcccaacggacacgagacgctcagagactctagcagctccgagcactctgcagac
tctgctaaagaacttgcccaagccaaggtagaagctccaacccctccaaccgaagtgact
gcagaagcgcaggcatctgaacccacggcggaaaatcagcaacaacctgcagaacaaact
aaagcagatgaatcatag
DBGET
integrated database retrieval system
