Colossoma macropomum (tambaqui): 118824722
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Entry
118824722 CDS
T09004
Symbol
mtrex
Name
(RefSeq) LOW QUALITY PROTEIN: exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118824722 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmao03019
]
118824722 (mtrex)
03041 Spliceosome [BR:
cmao03041
]
118824722 (mtrex)
03009 Ribosome biogenesis [BR:
cmao03009
]
118824722 (mtrex)
03016 Transfer RNA biogenesis [BR:
cmao03016
]
118824722 (mtrex)
Enzymes [BR:
cmao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118824722 (mtrex)
Messenger RNA biogenesis [BR:
cmao03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
118824722 (mtrex)
Spliceosome [BR:
cmao03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
118824722 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
118824722 (mtrex)
Ribosome biogenesis [BR:
cmao03009
]
Eukaryotic type
Pre-60S particles
Helicases
118824722 (mtrex)
Transfer RNA biogenesis [BR:
cmao03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
118824722 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
118824722
NCBI-ProteinID:
XP_036450982
LinkDB
All DBs
Position
Unknown
AA seq
1037 aa
AA seq
DB search
MADAFGGDLFSVFEEEQSSSSKKPSSKTTAQPGKTASTHGKDKTDSPSVSGAKREADNDG
TEEVVFGKKAKLETVSAEEINLADLMPKVKVEQVETVEGCTHEVALPADEEYKQLKPRVG
KAAKEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSP
IKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVI
FDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVYTD
YRPTPLQHYIFPAGGDGLHLVVDENGEFREDNFNTAMQVLRDAGDQGGSGGGKWDPKGRR
GGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVSKLDFNTDEEKKLVEEVFS
NAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETF
AMGINMPARTVLFTSARKFDGKDFRWISSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSP
AVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVLDKM
KKLEEMYNSIEIPNEESVVTYYKIRQQLAKLGKEIEEYVRKPKYCLPFLQPGRLVKVKKE
DXGFGWGVVVNFSKKSNVKASTGELDPLYVVEVLLHCSKDSVKNAATEAAKPAAAGEKGE
MQVVPVLLNLLTSFSSVRLYIPKDLRPYDNRQSMLKSIQEVQKRFPDGLPLLDPIDDMGI
KDPGLKKVIQKVEAFEHRMYTHPLHSDPNLEAVYTLCEKKALVAGDIKSAKRELKKARTV
LQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMIFNGLFNDLTAEQA
TALLSCFVFQENANEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEVDEETYMNQFRPH
LMDVVYTWANGASFSQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAL
GITKIKRDIVFAASLYL
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcatttggaggggatttgttcagcgtgtttgaggaggaacagagcagttcc
agcaaaaaaccatcctcaaagactacagcgcagcccgggaaaacagccagcacacatggc
aaagacaagacagactctccatctgtctcaggggcgaagcgagaggcagataacgatggg
actgaggaggtggtgtttggtaaaaaagccaagctggagacagtctcagcagaggagatc
aatcttgcagacctgatgcctaaagtgaaagtggagcaggttgagacggtggagggctgc
acacatgaagtggcgctacctgcagatgaggagtacaaacagctgaagccgcgagtcgga
aaagcagccaaggaatacccctttattctggaccctttccagcgggaggccattttgtgc
atcgacaacaatcagtcagttttggtgtcggctcacacctctgccgggaaaaccgtgtgt
gctgagtatgcgattgctctggctctgagagagaagcagcgagtgatcttcaccagccct
attaaagctcttagtaatcagaagtacagagaaatgtatgaggagtttcaggatgtcggc
ctaatgactggagatgttaccatcaaccccacagcgtcctgcctcgtcatgaccacagag
attttgaggagtatgctgtatcgagggtcagaggtcatgcgcgaggtggcctgggtcatc
tttgatgagattcactacatgagggactcagagcgtggagtggtttgggaggagacgatc
atcctgctccccgataatgttcactatgtcttcctgtctgccaccatccccaatgcccga
cagttcgctgagtggatctgccacctgcacaaacagccgtgccatgtggtgtacacagat
taccggcccactccactgcagcactacatatttccagcagggggcgacggacttcacctg
gtcgtggatgagaatggtgagtttagggaggataactttaacacagccatgcaggtgctg
cgggatgccggagaccaggggggcagcggtggggggaagtgggaccccaaaggcaggaga
ggaggcactaaaggtccatccaatgtgtttaagattgtgaagatgatcatggagaggaac
ttccagcctgtcatcatcttcagcttcagcaaaaaggagtgtgaggcctacgctctgcaa
gtgtctaaactggactttaacacagatgaggagaagaaactggtggaggaggttttcagc
aatgctatcgactgtctgtcagatgaagacaaaaagctgccacaggtggagcatgtcctc
cctctgctgaagagaggcattgggatccatcatggtggactgctgcccattctgaaggag
accatcgagatcctgttctctgagggccttctcaaggcgctgttcgctacggagacattt
gccatggggatcaacatgcctgcacgaactgtactgtttaccagcgcacgcaagtttgat
ggcaaggacttccgctggatcagctcaggagagtacatccagatgtccggccgtgctggg
aggagagggatggacgagagaggaatagtcattttcatggtggacgagaagatgagtccg
gctgtgggaaaacaactgttaaagggctctgctgacccgttgaacagtgcgttccacctg
acctataacatggtgctgaatctgctgcgtgtggaggagataaacccggagtacatgctg
gagaaatccttctaccagttccagcactacagggcagtacccggcgtactggacaagatg
aagaagctggaggagatgtataattccatagagatccctaacgaggagagcgtggtcacc
tactataagatccgtcagcagttagccaagctgggtaaagagattgaggagtatgttcgt
aagcccaaatactgcctgcccttcctgcagcctggacgactagtgaaggttaaaaaggaa
gacnctggatttggctggggcgtggtagttaatttctcaaaaaaatcgaacgtcaaagcc
agtacgggcgagctggaccctctgtatgtagtggaggttttgttgcactgcagtaaagac
agtgtgaagaacgctgcaacagaggcagccaaacccgctgcagctggagagaaaggagag
atgcaggtggttcctgtcttgttgaacttgttgacctccttcagctccgtgcggctctac
atccctaaagacctgcggccgtatgacaacagacagagcatgctcaaatccattcaggag
gtacagaagcgttttcctgatgggctccctctgctggacccgatcgatgatatgggcatt
aaagacccaggcctgaaaaaggtcatccagaaggtcgaggcatttgagcacaggatgtac
acacatccgcttcacagtgacccaaacctggaggccgtgtacactctctgcgagaagaaa
gctctggttgcgggtgatataaagtctgcgaagcgcgagctgaagaaggctcgcaccgtg
ctgcagatggacgagctaaagtgcaggaagcgcgttctgcgccgcctcggattcgccacg
tcctccgacgtcatcgagatgaagggccgggtggcctgtgagatcagcagtgcggatgag
ctgctcctgaccgagatgatttttaacgggctttttaacgatctgacggcagagcaggcg
acggctctgctgagctgcttcgtcttccaggaaaatgctaatgagatgccaaagttgacg
gagcagttagcaggtccgctgcgtcagatgcaggaatgtgccaagcgcattgccaaagtt
tctgctgaggcgaagttggaggtggatgaggaaacttacatgaaccagttccgcccacac
ctgatggacgtggtttacacctgggccaatggggcgtccttctcacagatctgcaaaatg
accgacgtcttcgaaggcagtataatccgctgtatgcggcggctggaggagctcctgagg
cagatgtgtcaggcagccaaggctattggcaatacagagctggagaataagtttgctctt
ggtataacgaagatcaagagagatatcgtgtttgctgccagtctttacctgtaa
DBGET
integrated database retrieval system
