Colossoma macropomum (tambaqui): 118825040
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Entry
118825040 CDS
T09004
Symbol
u2af2a
Name
(RefSeq) U2 small nuclear RNA auxiliary factor 2a isoform X1
KO
K12837
splicing factor U2AF 65 kDa subunit
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118825040 (u2af2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmao03041
]
118825040 (u2af2a)
Spliceosome [BR:
cmao03041
]
Complex A
U2 snRNP components
U2 related factors
118825040 (u2af2a)
Complex B
118825040 (u2af2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
Transformer
RRM_occluded
RRM_7
Motif
Other DBs
NCBI-GeneID:
118825040
NCBI-ProteinID:
XP_036451435
LinkDB
All DBs
Position
Unknown
AA seq
463 aa
AA seq
DB search
MSDFDEFERQLTENKQADRDKENKHHRRSSSRSRSRDRDRKRRSRDRERRGSRDRHGDSK
DRRHRRSRSPHREKKKIKVKKYWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPEG
LAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEESMMDFFNAQMRLGGLTQAPGNPVLAV
QINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGV
VSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVD
VNVSDQAIAGLNGMQLGDKKLLVQRASVGSKNTSLTSINQTPVTLQVPGLMNSSMNQMGG
IPTEILCLMNMVSPEELLDDEEYEEIVEDVRDECSKYGQVKSIEIPRPVDGLEVPGTGKI
FVEFMSVFDSQKAMQGLTGRKFANRVVVTKYCDPDAYHRRDFW
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatttcgacgagttcgagcggcagctgaccgagaacaaacaagctgaccgagat
aaagagaataaacaccaccggcgcagcagctcgaggagtcggagccgagatcgggaccgg
aagaggaggagcagagacagagagcggcgaggcagccgagaccgccatggggacagcaag
gaccgcagacatagacggagtcgatctccacaccgtgagaagaagaagattaaagtgaaa
aagtactgggacgttcctcctcctggcttcgagcacatcacgcccatgcagtacaaagcc
atgcaagctgctggacagattcctgccactgcccttcttcccacaatgacccctgagggt
ctggccgtgaccccgactcccgtgcctgttgtgggaagccaaatgacccgccaggctcga
cgactctacgtgggcaacatcccattcggcatcacagaagagtccatgatggacttcttc
aatgctcagatgcggcttggaggcttaactcaggccccaggaaacccggtgcttgcagtg
caaatcaaccaggacaaaaactttgcgttcctggagttccgttcggtggatgagacgacg
caggccatggcctttgatggcatcatcttccagggtcagagtctgaagatccgccgaccg
catgactaccagcctctgccgggcatgagcgaaaaccccagcgtctatgtgccaggcgtc
gtgtccacagtggtgcccgactcagcgcataagcttttcattggcgggctgcccaattac
ctcaacgatgatcaggtgaaggagctgttgacatcgtttggtcctctcaaagcctttaac
ctggttaaggacagcgctacaggcctttcaaaaggctacgccttctgtgaatatgttgac
gtcaacgtcagtgaccaggctatcgctggcctcaatggcatgcagctgggtgacaagaaa
ctcctggtccagagagccagtgttggatccaagaacacctcactgaccagtataaaccag
acgccagtgacgctgcaggtgccgggcctgatgaacagctccatgaaccagatgggagga
atccccactgagattctgtgcctgatgaacatggtgtcccctgaggagctgctggatgac
gaagaatacgaggagattgtggaggacgtcagagacgagtgcagtaaatatggtcaggtg
aagagcatcgagatcccgcggcctgttgacggcctggaggtgcctggcaccggaaagatc
tttgtggagttcatgtcagtgtttgactctcagaaggccatgcaagggttaacaggaagg
aagtttgccaacagagtggtggtgaccaaatattgcgacccagatgcctaccaccgccga
gacttctggtag
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