Colossoma macropomum (tambaqui): 118825626
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Entry
118825626 CDS
T09004
Symbol
thoc1
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao03013
Nucleocytoplasmic transport
cmao03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118825626 (thoc1)
09122 Translation
03013 Nucleocytoplasmic transport
118825626 (thoc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmao03019
]
118825626 (thoc1)
03041 Spliceosome [BR:
cmao03041
]
118825626 (thoc1)
Messenger RNA biogenesis [BR:
cmao03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
118825626 (thoc1)
Spliceosome [BR:
cmao03041
]
Complex C
Other components
EJC/TREX
118825626 (thoc1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
118825626 (thoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
efThoc1
Death
Stonustoxin_helical
Motif
Other DBs
NCBI-GeneID:
118825626
NCBI-ProteinID:
XP_036452223
LinkDB
All DBs
Position
Unknown
AA seq
652 aa
AA seq
DB search
MSPGVFNLVESREKFTAATKTALSSRSCKPLTSVFTHLPGNETEKKSTLDQALRGVLVEQ
IVKHADVDDHLSLIYVSIDGVTEGICSATTPFVLLGDVLDCLPLDQCDKIFSFVEENVST
WKSNSFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQFN
LDNITVFNKNEQESTFGQQSTEVKEDGMEVEEGEMGDEEAPAPCSIPIDYNLYRKFWTLQ
DYFRNPVQCYDKFSWITFVKYSDETLAVFKSYKLDDTQASKRKLEEMRTAGGEHVYFAKF
LTSEKLMDLQLSDSNFRRHILLQYLILFQYLRGQVKFKSSNCVLNDDQTAWMEETTKLVY
QLLRETPPDGDKFAAMVEHILNTEENWNSWKNEGCPSFVKERSAETKPARPSRKRPAPED
FLGKGPDRKILMGNDELTRLWNLNPDNMEACKTDSREFMPSLEDFFEEAIEQADPTNMVE
DEYKVVGNSNYGWRALRLLSRRSPHFFQPTNQQFKSLAEYLENMVIKLAKELPKDLPSEE
IKTGEEEDENGDNLLKASNDSPSIQSKLVTNSQMDEIAAKLGGQWRALADHLEMKPAEIR
EIESDSEDVELQAKMLLVAWQDREGPQATMESLITALNAAGFTGIADGLSET
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgtctccgggcgtgtttaacctggtggagagcagagagaagttcacggctgctactaaa
actgctctgtcgtccaggagctgcaaacctctgaccagcgtgttcacccacctccccgga
aatgagacggagaagaagagcacgctggaccaggctctgcggggcgtcctggtggagcag
atcgtcaaacacgcagacgtggacgatcatctctctctgatctacgtcagcatcgatgga
gtcactgagggcatctgctcagccaccaccccgttcgtgttgctcggcgatgtcctggac
tgcctcccgctggaccagtgtgataagatcttctcgtttgtggaggagaacgtttccacg
tggaaatctaattccttctactcggctgggaagaactacctgttgaggatgtgtaacgat
ctcctccgaagactgtctaaatcccagaatacggtgttctgcgggaggatccagctgttc
ctcgcccggctcttccccctgtctgagaaatcaggtttgaatctgcagagtcagtttaac
ctggacaacatcacagtgttcaacaagaacgaacaggagagcacgttcggacagcagagc
actgaggtgaaggaggatgggatggaggtggaggaaggagaaatgggcgatgaagaagct
ccggctccatgttccattccgatagactataacctgtacaggaagttctggacgctgcag
gattatttcagaaaccctgtgcagtgttacgataagttctcctggatcaccttcgttaag
tactctgatgagactctagctgtgtttaagagctataaactggatgacactcaggcctct
aagaggaagctggaggagatgaggacggccggaggagaacacgtctacttcgccaagttc
ctcaccagcgagaagctgatggatcttcagctgagtgacagtaacttcagacgccacatc
ctgctgcagtacctcatcctgttccagtacctgagggggcaggtcaagttcaaaagctcc
aactgcgtcctcaatgacgatcagacggcctggatggaggaaaccaccaaactcgtctat
cagttgctcagagaaactcctccagatggtgataagtttgccgccatggttgagcacatt
ctgaacacagaggagaactggaactcctggaagaacgagggctgcccgagcttcgtcaaa
gaaaggtcagcagaaaccaaacccgctcggcccagcaggaagaggccggcgccggaggac
tttctgggaaaaggtcctgaccgaaagatcctgatggggaatgatgaactgacgagactg
tggaacctcaatccagacaacatggaggcctgcaagactgacagcagggagttcatgccg
tctctggaggacttttttgaggaggccatcgaacaggccgacccgacgaacatggtggag
gacgagtacaaggtggtggggaactctaattacggctggagggcccttcgtctcctctct
cgccgaagcccacacttcttccagcccaccaaccagcagttcaagagcctggcggagtac
ctggagaacatggtcatcaaactggctaaagaactgcccaaagatctcccctctgaggag
ataaagacgggagaggaggaggacgagaacggagacaacctgctgaaagccagtaacgac
agtccgagcattcagagcaagctggtgaccaacagtcagatggacgagattgcggcgaag
ctgggcggccagtggagggcgctggcagatcatctggagatgaagccggcggagatccgg
gagatcgagtcggacagcgaggacgtggagctgcaggccaagatgctgctggtggcctgg
caggaccgcgaggggcctcaggccaccatggagagcctcatcaccgcgctgaacgccgcc
ggattcaccggcatcgcagacggcctgagcgaaacataa
DBGET
integrated database retrieval system
