Colossoma macropomum (tambaqui): 118825732
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Entry
118825732 CDS
T09004
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao04382
Cornified envelope formation
cmao04510
Focal adhesion
cmao04512
ECM-receptor interaction
cmao04518
Integrin signaling
cmao04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118825732 (col4a5)
04518 Integrin signaling
118825732 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118825732 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
118825732 (col4a5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
118825732 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cmao04147
]
118825732 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
cmao00536
]
118825732 (col4a5)
Exosome [BR:
cmao04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
118825732 (col4a5)
Glycosaminoglycan binding proteins [BR:
cmao00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118825732 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
DUF6313
Motif
Other DBs
NCBI-GeneID:
118825732
NCBI-ProteinID:
XP_036452414
LinkDB
All DBs
Position
Unknown
AA seq
1690 aa
AA seq
DB search
MNKKFKSLLKLVAVLLFITLCCGVQDSQAAACHGCGTGSKCDCTGVKGEKGDRGFPGLQG
QPGVPGFPGPEGPIGPRGDKGDDGPVGPHGPKGIRGPPGLPGFPGTPGIPGIPGQDGPPG
PKGIAGCNGTKGERGLPGGPGSPGIPGQPGLPGLQGEKGDPGDIISVDQFGVPGEPGDPG
RPGFRGVPGPPGLTGPIGPAGQRGFQGPPGPPGPPGPKGNMGLNFQGPKGEKGEPGLKGP
PGPPGQVGEFSSHLDTVIQRGEKGDRGPPGPPGFTGPPGPPGSPGGQKGEKGEPGEPGKR
GKPGKDGDPGPPGFPGAKGDAGSPGFPGRDGERGDKGDRGLPGPPGRVISGINGVPAGPK
GDPGVPGAPGRKGERGPQGITGPPGQPGAPAIGRPGGPGPPGFPGERGQKGDEGQPGVSL
PGPPGRPGLQGLKGPPGPPGPPGISSGDGTCQPGPQGLPGLQGERGFPGEIGQKGEKGDT
CVNCFSNGTPIQGPPGPPGPPGIPGDPGVTGSKGDRGYPGNPGAAGPPGLPGLQGIPGES
GEKGDPGDAIVVDGMKGQKGDSGFPGPPGLPGLEGRPGRDGYPGPPGPKGPPGSLQIRGE
RGPPGEPGAQGLPGDRGPPGSPGYGPQGPTGVKGIQGVSGRPGVPGPPGQKGEPGESHSE
KGAPGLPGRDGDPGPPGNPGNPGPTGQPGFPGLPGPKGEPGLPGIGLPGPPGAKGFPGIA
GNPGSPGLPGPPGVDGLPGQPGLSGAKGEPGFGIPGPQGPPGPSGIKGTTGPKGDSGFPG
NTGAPGRPGVDGLPGAKGDPGLPGARGPPGPPGQPGYGSPGLPGPPGLPGPVGPPGFPGV
KGDKGDTGPAGVGIPGPTGNQGNPGFPGLPGPPGPTGSPGPSGRDGQPGLPGSKGDMGVM
GAPGTAGNPGNPGVPGFPGPKGDDGLPGRPGNPGNAGTKGDKGDPGIPGPPGLITPENLP
KGAKGDPGPPGLGGFPGAKGIAGLPGDPGPAGLDGRPGSPGPQGPKGETGPFGVPGAPGA
PGLKGSMGEMGLPGPRGAKGNAGFPGQPGQPGFSGAPGFPGPKGEPGTPGFGQPGLPGPK
GDPGYPGSPGSPGQKGLQGSPGLPGLPGNPGTKGDPGLPGLQGAPGTPGPKGLDGTAGAP
GLNGAPGRPGEPGQPGSPGFPGEKGQAGRDGIPGPAGVKGDPGPPGIGSVGSPGFPGLPG
SKGDPGLPGLPGAPGYPGLKGEAGFPGPQGLPGSQGPPGPPGQSLQGPKGGPGPPGLPGR
QGLAGPPGPPGPEGPRGFPGAGGQKGEKGFQGVPGSPGLPGEKGETGFQGSPGPAGMPGN
PGAKGDVGLPGVRGFPGPKGLSGPAGSTGSPGEPGDPGPPGPPGKPGLAPTPIVVKGEQG
VPGPPGLQGVRGAQGPQGQPGLQGQPGAPGQPGPEGPPGGSGIPGRKGDQGAPGLPGDRG
FPGPPGAEGPQGSPGPPGLVSAAHGFLITRHSQSVEVPRCPDGTTPIYDGYSLLYVQGNE
RAHGQDLGTAGSCLKRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPIKGES
IKPFISRCAVCEAPAMVIAVHSQTIQVPECPENWIDLWIGYSFMMHTSAGAEGSGQALAS
PGSCLEDFRSSPFIECHGHGTCNYYGNSYSFWLATIDRNEMFRKPQSETLKAGNLQTRVS
RCIVCMKRTT
NT seq
5073 nt
NT seq
+upstream
nt +downstream
nt
atgaataagaagtttaagagtctgctgaagctcgtcgcggtgctgctgttcattacgctc
tgctgtggggttcaggactcccaggctgcggcatgtcatggctgtgggacgggatcaaag
tgcgactgcaccggtgtgaaaggagagaagggtgacaggggtttcccaggactgcagggt
cagccaggtgtaccaggatttcctggcccagaagggccaattggacctcgtggagacaag
ggtgatgatggacctgttggaccacatgggcctaaaggaataagaggacctcccgggctg
cctggatttccagggacaccaggaattccaggtattccaggacaagatggcccaccgggt
ccgaagggaattgcagggtgtaatggaacaaagggtgagagaggccttccaggaggtcca
ggtagcccaggtattcctggtcagccaggtcttcctggtttgcaaggcgagaagggagat
cctggtgatatcatctctgtagaccaatttggagtgccaggagaacctggagaccccggc
cgaccaggcttcagaggagttccaggacctcctgggttaactggtcctattggtcctgct
ggccagagaggtttccagggtccccccggtcctcctggtccaccagggcctaagggcaat
atgggattgaacttccaggggccgaaaggagagaagggtgaacctggtttgaaggggcct
cccgggccaccggggcaggttggcgagttttcaagtcatctggacacagtgattcagcga
ggagagaagggtgatcgtggcccacctggaccaccaggatttactggccctcctggacca
cctggttcacctggcggtcagaaaggagaaaagggagagccaggagaacccggaaagagg
ggcaagcccggtaaagatggggaccctggtcctccaggatttccgggtgcaaaaggagat
gctggtagtcctggctttccaggaagagatggtgaaagaggtgataaaggtgaccgagga
cttcctggacctcctggcagggtgatcagtggcataaatggggttccagcaggacccaaa
ggagaccccggtgtccctggagcccctgggaggaaaggagaaagaggaccgcaaggtatc
acaggaccacccggtcagccaggtgctccagcaattggccgtcctggcggacctggtccc
cctggtttccctggagagagagggcagaagggggatgaaggacagcctggagtctctttg
ccaggtccacctggaagacctggtctgcagggcctgaaaggaccaccgggacctcccgga
ccccctggaatatccagtggcgatgggacctgtcaaccgggtccacagggccttccaggt
cttcagggggaacgtggtttcccaggggagataggccagaaaggtgaaaaaggagacaca
tgtgtgaattgtttctccaatggaacccccatccaaggaccaccgggccctcctggacct
ccaggaattccaggtgatcctggtgtaactggctctaaaggagatagaggatacccaggc
aacccaggtgctgcgggcccaccaggtctaccgggactgcagggtatacctggagaatct
ggcgagaagggtgatcctggtgatgctatcgttgttgatggtatgaagggacagaaggga
gactcaggcttccctggacctcccggtctgcctgggcttgaaggaagacctggtcgtgat
ggctaccctggaccacctggtcctaaaggaccaccaggttctctacagattagaggtgaa
cgtggccctccaggtgagccaggtgcccagggtcttccaggagacagaggaccccctgga
tcccctggatatggacctcagggaccaactggagtgaaaggaatccaaggagtttcagga
agaccaggagttcctggaccaccaggtcagaaaggtgaaccgggtgagtctcactctgag
aaaggtgcacctggactccctggacgtgatggagaccctggtccaccaggaaatccagga
aacccaggtccaactggacagccaggtttcccagggttacctggaccaaaaggagaacct
ggtcttccaggtataggtttgccaggacccccaggagctaaaggattcccaggtattgct
ggcaatcctggtagccctggcctccccggaccaccaggtgtggatggactgcctggtcag
cctggactttctggggcaaagggagaacctggttttggaatccctggccctcaggggccc
ccaggtcccagtggcattaaaggcacaacagggcctaaaggtgattccgggttccctgga
aacactggtgcccctggccgaccaggtgtcgatggccttcctggagctaaaggtgatcct
gggcttcctggtgcacggggcccccctggccctccaggccaacctggatatggttcaccg
ggactacctggcccccctggacttcctggacctgtgggtcctcctggtttccctggtgtg
aaaggtgataaaggagatactggccccgcaggtgtaggcatcccaggcccgactggcaac
caaggaaatcctggattccctggactcccaggtcctcctggccccactggaagccctggc
ccttctggccgagatggacaacctggtctccctggatcaaagggagacatgggtgtaatg
ggtgctccaggaactgccggtaaccctggcaaccctggtgttccaggcttccctggaccg
aaaggtgatgatggtctcccaggacggccagggaatccaggtaatgcaggaacaaaggga
gacaaaggtgatccaggtattccaggtcctcctggcctcatcactcctgaaaatttgcca
aaaggagccaagggagatccaggacctccaggtcttggtggttttccgggagcaaaaggt
attgctggtctcccaggagacccaggtcccgctggactggatggacgtcctggctcacct
ggaccccaaggcccaaaaggagaaactggaccttttggagtacccggagcacctggcgcc
ccaggactaaaaggcagtatgggcgagatgggactgcctggccctcgtggagctaaagga
aacgctggtttccctggacaacctggacagcctggtttttcaggagcaccagggttcccc
ggtcccaaaggagagcccggcactccaggatttggacaaccaggacttccagggcccaag
ggtgatcctggctatcctggctcccctggatcccctgggcaaaaaggtctgcaagggtct
ccaggccttcctggattacctggaaaccctggaacaaagggtgatcccggcctcccagga
ctacaaggtgcacctggtactcctggtcctaagggtttggatggaaccgcaggagcacct
ggcctaaatggagcacctggaaggccaggagaacctggccaacctggctcacctggtttc
cctggagaaaagggtcaagctggtcgtgacggtattcctggacctgccggagtgaaggga
gacccaggtcctccaggtattggaagcgtgggttcacctggtttcccagggttgccaggt
tcaaaaggagaccctggcttacctggactgcctggtgcccctggatacccaggattaaag
ggagaggcaggattccctggcccacagggccttcctggtagtcaggggcctcctggtcct
cctggtcagtctctgcagggccctaaaggtggtccaggtcctcctggtctacctggaaga
caaggcctggcaggtcctccaggtcctcctggcccagagggtccccgtggatttccagga
gctggagggcagaagggtgagaaaggctttcaaggagttcctggatcacctggcttacct
ggagagaaaggagaaactgggtttcaaggctcaccgggccctgctggcatgccaggaaat
cctggagctaaaggagatgtaggtcttccaggcgttcgtggattcccaggacctaaaggt
ttgtctggtcctgctggatctacgggttcccctggtgagcctggtgatcccggtcctcca
ggccctcctggtaaaccaggtttagctccaactcccattgtggtaaaaggtgagcaagga
gtgcctggtcccccgggcctccaaggagtccgaggtgcacaaggaccacaagggcagcca
ggtctgcaaggtcagcctggtgcccccggtcagccaggtcctgagggacccccaggaggc
agtggcatacctggaagaaaaggagatcagggagcacctgggctgccaggagacaggggt
ttcccaggccctcctggtgcagaaggccctcagggttctccaggccctccaggtctagtc
tcagctgcacatggcttcctgatcacacggcacagccagagtgtagaggtgcccagatgc
ccagatggcaccacacccatctacgatggctactctctgctctatgtgcagggcaatgag
agagcccacggccaagacctgggtactgctgggagttgtctaaaacgtttcagcaccatg
cctttcatgttctgcaacatcaacaatgtgtgcaattttgcctcacggaacgactactct
tactggctgtccactcctgagcctatgcccatgagtatggcccctatcaagggagagagc
atcaaacccttcatcagcagatgtgctgtatgtgaagccccagccatggtgattgcagtg
catagccagaccatccaggtgccagagtgtcctgaaaattggatcgatctgtggattggc
tactccttcatgatgcacactagtgcaggtgcggaaggctctggtcaggccctggcctct
cctggctcctgtctggaggatttccgctcgtctcccttcatcgagtgccatggccacgga
acctgcaactactatggcaactcctacagcttctggctggccacaattgacaggaatgaa
atgttcaggaagccgcagtcagagacgctgaaagcagggaacctccagacacgcgtgagc
cgctgtattgtgtgtatgaagaggacgacgtaa
DBGET
integrated database retrieval system
