Colossoma macropomum (tambaqui): 118825732
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Entry
118825732 CDS
T09004
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao04510
Focal adhesion
cmao04512
ECM-receptor interaction
cmao04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118825732 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118825732 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
118825732 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cmao04147
]
118825732 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
cmao00536
]
118825732 (col4a5)
Exosome [BR:
cmao04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
118825732 (col4a5)
Glycosaminoglycan binding proteins [BR:
cmao00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118825732 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
DUF6313
Motif
Other DBs
NCBI-GeneID:
118825732
NCBI-ProteinID:
XP_036452414
LinkDB
All DBs
Position
Unknown
AA seq
1690 aa
AA seq
DB search
MNKKFKSLLKLVAVLLFITLCCGVQDSQAAACHGCGTGSKCDCTGVKGEKGDRGFPGLQG
QPGVPGFPGPEGPIGPRGDKGDDGPVGPHGPKGIRGPPGLPGFPGTPGIPGIPGQDGPPG
PKGIAGCNGTKGERGLPGGPGSPGIPGQPGLPGLQGEKGDPGDIISVDQFGVPGEPGDPG
RPGFRGVPGPPGLTGPIGPAGQRGFQGPPGPPGPPGPKGNMGLNFQGPKGEKGEPGLKGP
PGPPGQVGEFSSHLDTVIQRGEKGDRGPPGPPGFTGPPGPPGSPGGQKGEKGEPGEPGKR
GKPGKDGDPGPPGFPGAKGDAGSPGFPGRDGERGDKGDRGLPGPPGRVISGINGVPAGPK
GDPGVPGAPGRKGERGPQGITGPPGQPGAPAIGRPGGPGPPGFPGERGQKGDEGQPGVSL
PGPPGRPGLQGLKGPPGPPGPPGISSGDGTCQPGPQGLPGLQGERGFPGEIGQKGEKGDT
CVNCFSNGTPIQGPPGPPGPPGIPGDPGVTGSKGDRGYPGNPGAAGPPGLPGLQGIPGES
GEKGDPGDAIVVDGMKGQKGDSGFPGPPGLPGLEGRPGRDGYPGPPGPKGPPGSLQIRGE
RGPPGEPGAQGLPGDRGPPGSPGYGPQGPTGVKGIQGVSGRPGVPGPPGQKGEPGESHSE
KGAPGLPGRDGDPGPPGNPGNPGPTGQPGFPGLPGPKGEPGLPGIGLPGPPGAKGFPGIA
GNPGSPGLPGPPGVDGLPGQPGLSGAKGEPGFGIPGPQGPPGPSGIKGTTGPKGDSGFPG
NTGAPGRPGVDGLPGAKGDPGLPGARGPPGPPGQPGYGSPGLPGPPGLPGPVGPPGFPGV
KGDKGDTGPAGVGIPGPTGNQGNPGFPGLPGPPGPTGSPGPSGRDGQPGLPGSKGDMGVM
GAPGTAGNPGNPGVPGFPGPKGDDGLPGRPGNPGNAGTKGDKGDPGIPGPPGLITPENLP
KGAKGDPGPPGLGGFPGAKGIAGLPGDPGPAGLDGRPGSPGPQGPKGETGPFGVPGAPGA
PGLKGSMGEMGLPGPRGAKGNAGFPGQPGQPGFSGAPGFPGPKGEPGTPGFGQPGLPGPK
GDPGYPGSPGSPGQKGLQGSPGLPGLPGNPGTKGDPGLPGLQGAPGTPGPKGLDGTAGAP
GLNGAPGRPGEPGQPGSPGFPGEKGQAGRDGIPGPAGVKGDPGPPGIGSVGSPGFPGLPG
SKGDPGLPGLPGAPGYPGLKGEAGFPGPQGLPGSQGPPGPPGQSLQGPKGGPGPPGLPGR
QGLAGPPGPPGPEGPRGFPGAGGQKGEKGFQGVPGSPGLPGEKGETGFQGSPGPAGMPGN
PGAKGDVGLPGVRGFPGPKGLSGPAGSTGSPGEPGDPGPPGPPGKPGLAPTPIVVKGEQG
VPGPPGLQGVRGAQGPQGQPGLQGQPGAPGQPGPEGPPGGSGIPGRKGDQGAPGLPGDRG
FPGPPGAEGPQGSPGPPGLVSAAHGFLITRHSQSVEVPRCPDGTTPIYDGYSLLYVQGNE
RAHGQDLGTAGSCLKRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPIKGES
IKPFISRCAVCEAPAMVIAVHSQTIQVPECPENWIDLWIGYSFMMHTSAGAEGSGQALAS
PGSCLEDFRSSPFIECHGHGTCNYYGNSYSFWLATIDRNEMFRKPQSETLKAGNLQTRVS
RCIVCMKRTT
NT seq
5073 nt
NT seq
+upstream
nt +downstream
nt
atgaataagaagtttaagagtctgctgaagctcgtcgcggtgctgctgttcattacgctc
tgctgtggggttcaggactcccaggctgcggcatgtcatggctgtgggacgggatcaaag
tgcgactgcaccggtgtgaaaggagagaagggtgacaggggtttcccaggactgcagggt
cagccaggtgtaccaggatttcctggcccagaagggccaattggacctcgtggagacaag
ggtgatgatggacctgttggaccacatgggcctaaaggaataagaggacctcccgggctg
cctggatttccagggacaccaggaattccaggtattccaggacaagatggcccaccgggt
ccgaagggaattgcagggtgtaatggaacaaagggtgagagaggccttccaggaggtcca
ggtagcccaggtattcctggtcagccaggtcttcctggtttgcaaggcgagaagggagat
cctggtgatatcatctctgtagaccaatttggagtgccaggagaacctggagaccccggc
cgaccaggcttcagaggagttccaggacctcctgggttaactggtcctattggtcctgct
ggccagagaggtttccagggtccccccggtcctcctggtccaccagggcctaagggcaat
atgggattgaacttccaggggccgaaaggagagaagggtgaacctggtttgaaggggcct
cccgggccaccggggcaggttggcgagttttcaagtcatctggacacagtgattcagcga
ggagagaagggtgatcgtggcccacctggaccaccaggatttactggccctcctggacca
cctggttcacctggcggtcagaaaggagaaaagggagagccaggagaacccggaaagagg
ggcaagcccggtaaagatggggaccctggtcctccaggatttccgggtgcaaaaggagat
gctggtagtcctggctttccaggaagagatggtgaaagaggtgataaaggtgaccgagga
cttcctggacctcctggcagggtgatcagtggcataaatggggttccagcaggacccaaa
ggagaccccggtgtccctggagcccctgggaggaaaggagaaagaggaccgcaaggtatc
acaggaccacccggtcagccaggtgctccagcaattggccgtcctggcggacctggtccc
cctggtttccctggagagagagggcagaagggggatgaaggacagcctggagtctctttg
ccaggtccacctggaagacctggtctgcagggcctgaaaggaccaccgggacctcccgga
ccccctggaatatccagtggcgatgggacctgtcaaccgggtccacagggccttccaggt
cttcagggggaacgtggtttcccaggggagataggccagaaaggtgaaaaaggagacaca
tgtgtgaattgtttctccaatggaacccccatccaaggaccaccgggccctcctggacct
ccaggaattccaggtgatcctggtgtaactggctctaaaggagatagaggatacccaggc
aacccaggtgctgcgggcccaccaggtctaccgggactgcagggtatacctggagaatct
ggcgagaagggtgatcctggtgatgctatcgttgttgatggtatgaagggacagaaggga
gactcaggcttccctggacctcccggtctgcctgggcttgaaggaagacctggtcgtgat
ggctaccctggaccacctggtcctaaaggaccaccaggttctctacagattagaggtgaa
cgtggccctccaggtgagccaggtgcccagggtcttccaggagacagaggaccccctgga
tcccctggatatggacctcagggaccaactggagtgaaaggaatccaaggagtttcagga
agaccaggagttcctggaccaccaggtcagaaaggtgaaccgggtgagtctcactctgag
aaaggtgcacctggactccctggacgtgatggagaccctggtccaccaggaaatccagga
aacccaggtccaactggacagccaggtttcccagggttacctggaccaaaaggagaacct
ggtcttccaggtataggtttgccaggacccccaggagctaaaggattcccaggtattgct
ggcaatcctggtagccctggcctccccggaccaccaggtgtggatggactgcctggtcag
cctggactttctggggcaaagggagaacctggttttggaatccctggccctcaggggccc
ccaggtcccagtggcattaaaggcacaacagggcctaaaggtgattccgggttccctgga
aacactggtgcccctggccgaccaggtgtcgatggccttcctggagctaaaggtgatcct
gggcttcctggtgcacggggcccccctggccctccaggccaacctggatatggttcaccg
ggactacctggcccccctggacttcctggacctgtgggtcctcctggtttccctggtgtg
aaaggtgataaaggagatactggccccgcaggtgtaggcatcccaggcccgactggcaac
caaggaaatcctggattccctggactcccaggtcctcctggccccactggaagccctggc
ccttctggccgagatggacaacctggtctccctggatcaaagggagacatgggtgtaatg
ggtgctccaggaactgccggtaaccctggcaaccctggtgttccaggcttccctggaccg
aaaggtgatgatggtctcccaggacggccagggaatccaggtaatgcaggaacaaaggga
gacaaaggtgatccaggtattccaggtcctcctggcctcatcactcctgaaaatttgcca
aaaggagccaagggagatccaggacctccaggtcttggtggttttccgggagcaaaaggt
attgctggtctcccaggagacccaggtcccgctggactggatggacgtcctggctcacct
ggaccccaaggcccaaaaggagaaactggaccttttggagtacccggagcacctggcgcc
ccaggactaaaaggcagtatgggcgagatgggactgcctggccctcgtggagctaaagga
aacgctggtttccctggacaacctggacagcctggtttttcaggagcaccagggttcccc
ggtcccaaaggagagcccggcactccaggatttggacaaccaggacttccagggcccaag
ggtgatcctggctatcctggctcccctggatcccctgggcaaaaaggtctgcaagggtct
ccaggccttcctggattacctggaaaccctggaacaaagggtgatcccggcctcccagga
ctacaaggtgcacctggtactcctggtcctaagggtttggatggaaccgcaggagcacct
ggcctaaatggagcacctggaaggccaggagaacctggccaacctggctcacctggtttc
cctggagaaaagggtcaagctggtcgtgacggtattcctggacctgccggagtgaaggga
gacccaggtcctccaggtattggaagcgtgggttcacctggtttcccagggttgccaggt
tcaaaaggagaccctggcttacctggactgcctggtgcccctggatacccaggattaaag
ggagaggcaggattccctggcccacagggccttcctggtagtcaggggcctcctggtcct
cctggtcagtctctgcagggccctaaaggtggtccaggtcctcctggtctacctggaaga
caaggcctggcaggtcctccaggtcctcctggcccagagggtccccgtggatttccagga
gctggagggcagaagggtgagaaaggctttcaaggagttcctggatcacctggcttacct
ggagagaaaggagaaactgggtttcaaggctcaccgggccctgctggcatgccaggaaat
cctggagctaaaggagatgtaggtcttccaggcgttcgtggattcccaggacctaaaggt
ttgtctggtcctgctggatctacgggttcccctggtgagcctggtgatcccggtcctcca
ggccctcctggtaaaccaggtttagctccaactcccattgtggtaaaaggtgagcaagga
gtgcctggtcccccgggcctccaaggagtccgaggtgcacaaggaccacaagggcagcca
ggtctgcaaggtcagcctggtgcccccggtcagccaggtcctgagggacccccaggaggc
agtggcatacctggaagaaaaggagatcagggagcacctgggctgccaggagacaggggt
ttcccaggccctcctggtgcagaaggccctcagggttctccaggccctccaggtctagtc
tcagctgcacatggcttcctgatcacacggcacagccagagtgtagaggtgcccagatgc
ccagatggcaccacacccatctacgatggctactctctgctctatgtgcagggcaatgag
agagcccacggccaagacctgggtactgctgggagttgtctaaaacgtttcagcaccatg
cctttcatgttctgcaacatcaacaatgtgtgcaattttgcctcacggaacgactactct
tactggctgtccactcctgagcctatgcccatgagtatggcccctatcaagggagagagc
atcaaacccttcatcagcagatgtgctgtatgtgaagccccagccatggtgattgcagtg
catagccagaccatccaggtgccagagtgtcctgaaaattggatcgatctgtggattggc
tactccttcatgatgcacactagtgcaggtgcggaaggctctggtcaggccctggcctct
cctggctcctgtctggaggatttccgctcgtctcccttcatcgagtgccatggccacgga
acctgcaactactatggcaactcctacagcttctggctggccacaattgacaggaatgaa
atgttcaggaagccgcagtcagagacgctgaaagcagggaacctccagacacgcgtgagc
cgctgtattgtgtgtatgaagaggacgacgtaa
DBGET
integrated database retrieval system
