Colossoma macropomum (tambaqui): 118825735
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Entry
118825735 CDS
T09004
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
cmao
Colossoma macropomum (tambaqui)
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cmao00536
]
118825735
Glycosaminoglycan binding proteins [BR:
cmao00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118825735
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
CdrL_M
Motif
Other DBs
NCBI-GeneID:
118825735
NCBI-ProteinID:
XP_036452420
LinkDB
All DBs
Position
Unknown
AA seq
681 aa
AA seq
DB search
MKTLEAKEARECAANMESVSGASKRRRHCLRTAVNGAPFVLSAVSVAFCVLLGVQTNDVK
NRMTDLESARLSYPLAALSTEQLNSVIRERVDELLAQRAYEQFSRIRTARQASPECDCPP
GPPGKRGRRGRNGDPGPPGPPGPKGDKGDQGDQGPRMVFPKINHGFLSADQQLIKRRLIK
GDQGQAGPPGPPGPPGPPGPRGPPGDTGKDGPRGAPGQPGDPGTPGLLGSMGPEGPPGPK
GSIGLPGIPGIDGLKGEKGEQGEKGDMGEEGQKGDIGEKGDAGSSAAGIKGEPGEPGRSG
QKGEPGLPGLPGLPGIKGEPGFLGPQGEPGLPGLPGTKGERGESGPAGKGERGEIGPAGQ
KGAQGEPGTPGLKGSKGDTGDKGDAGLMGPRGPPGEKGDQGTTEIIDYNGNIQEALQKIT
TITVTGPPGPPGPVGPQGIKGDQGPPGLPGLDGERGYKGSKGDMGMPGIAGDKGAVGLPG
LPGVNGMKGEKGDSGMPGPQGPSIIGPPGAPGPHGPPGPMGPHGFPGPKGEPGLHGLKGA
RGEPGHKGDRGPMGLPGASGLDGKPGLRGMDGPIGAPGPAGPKGDRGEKGATGEPGPRGP
YGLPGAAGTPGLDGLPGLRGEKGDVGERGEKGEKGKKGKKGPKGEKGEQGAPGLDAPCPL
GPDGLPMPGCWQKGVTPWLVA
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgaagacgctagaagcgaaagaggcgcgcgaatgcgccgcaaatatggagagcgtctcc
ggcgcgagcaaacgccggcggcactgcctccgcaccgccgtgaacggagctccgtttgtg
ctctccgccgtgtctgtcgccttttgcgtccttctgggcgtccagaccaacgacgtgaaa
aacagaatgacggatttggagagcgcgcgcctgtcctacccgttggctgcgttgtcaacg
gagcagctcaattcagtaatacgggagagagtggacgagctgctggcacagcgcgcctac
gaacagttttccaggataaggactgcccgtcaggcttcacctgagtgcgactgcccacca
ggcccaccggggaagcgaggaagaagagggcgcaacggagatcctggaccccctggtcca
cctggtccaaaaggtgataagggtgatcaaggcgaccaggggccgcggatggtcttccct
aagatcaatcatggctttctttctgctgatcagcagctcattaagcgccggctcattaag
ggtgatcagggtcaagcaggtcccccaggacctcctggacctccaggcccccctggccct
aggggacccccaggggacacagggaaggatggccccagaggagcgccagggcaaccaggt
gaccctggaactccaggactgctcggctctatgggacctgagggccctccaggacccaag
ggttccattgggctgcctggcattccaggtattgatggattaaagggtgaaaaaggagag
cagggtgaaaagggtgacatgggagaagaaggccagaaaggtgacatcggtgagaagggt
gatgcagggtcttctgctgctgggattaagggtgaaccaggcgagccagggcgaagtggg
caaaagggagagccaggacttccagggctgcctggacttcccggaataaagggtgaacct
ggtttcctcgggcctcagggtgagccaggcctaccaggactgccaggaacaaagggagag
cgtggtgagtctgggccagcaggaaaaggtgaacgtggagagatcggaccggctgggcag
aagggagcacagggggaacctggaacaccaggcctcaaaggatccaagggggatactgga
gacaaaggggatgctggcctcatggggccaagaggtccaccgggagagaaaggtgaccag
ggcacaactgaaattattgactacaatggaaacatacaggaagcacttcagaagataacc
actattacagtgacgggtccccctgggcctcctggaccagttggaccacaaggcatcaag
ggtgatcaaggtcctccaggtcttccaggccttgatggagagaggggttacaaaggttca
aaaggagacatgggcatgcctggaatagctggtgataaaggagcagtaggattgcctggg
ctaccaggtgttaatggtatgaaaggagaaaaaggtgattctggtatgcctggacctcaa
ggaccatctattataggcccacctggagcacctgggccacatggcccacctggtccaatg
ggcccacatggattccctggaccaaagggggagccaggtttacatggtctgaaaggcgca
cggggggagccgggccacaagggtgaccgaggacccatgggtctccctggagcgtctggc
ttggacggcaagccgggattaaggggtatggatggcccaattggtgcccctggccctgct
ggtcctaaaggagacagaggtgagaaaggcgctacaggtgagcctgggccaagaggaccg
tatggactaccgggtgctgctgggacacctgggctggatgggttaccaggcttaagggga
gagaaaggcgacgtgggggaaagaggagaaaagggggagaagggaaagaagggcaaaaaa
gggcctaagggggagaaaggagaacagggtgccccaggattagatgcaccttgcccattg
ggtccagatggactaccaatgcctggctgctggcaaaagggagtcacaccttggttggtg
gcctga
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