Colossoma macropomum (tambaqui): 118825767
Help
Entry
118825767 CDS
T09004
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao04382
Cornified envelope formation
cmao04510
Focal adhesion
cmao04512
ECM-receptor interaction
cmao04518
Integrin signaling
cmao04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118825767 (col4a6)
04518 Integrin signaling
118825767 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118825767 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
118825767 (col4a6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
118825767 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cmao04147
]
118825767 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
cmao00536
]
118825767 (col4a6)
Exosome [BR:
cmao04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
118825767 (col4a6)
Glycosaminoglycan binding proteins [BR:
cmao00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118825767 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
118825767
NCBI-ProteinID:
XP_036452464
LinkDB
All DBs
Position
Unknown
AA seq
1664 aa
AA seq
DB search
MKLWVCVLAVIWSLQSAHAGTKTSGPCEGRDCSGGGCSCLPIKGSRGRPGPLGPVGPSGP
EGLGGAPGPVGPKGESGHVGRSGPSGPKGDKGPMGVPGFPGTDGVPGHPGQEGPRGLPGA
DGCNGTRGDPSFPGFPGLPGRSGTPGLPGIKGQKGEPVYIPTDITGPPGSPGPIGPVGPT
GPIGYPGPPGPPGPPGPTGNPGQGYQGETGEKGDVGPPGDPGRPLVNGIVELVGFPKGDK
GAQGDIGYAGEPGLPGRPGPPGPFGFTGEYGEKGIPGLPGLRGPPGLNGPRGEDGTNGYP
GDYGLPGQDGFPGPKGYRGDIGPPGPTAYTGEGGFLKGPRGDPGFDGYAGEVGDVGPEGL
PGEPGAPGSSISGSPGLPGLPGPPGSRGEKGNPGRTTYGPEGQPGSQGLPGPPGRPGPPG
RPAPFGPFETSSLPGPPGPKGVRGPPGERGYKGFKGELGDCNCLGGGTSGPQGPPGFKGF
PGLSGVSGQKGEIGDQGFPGLRGLQGPSGRPGERGFAGRKGEKGNSYFAGSQGQKGDRGE
PGPLGPKGDIGKPGRDGVSGSPGLPGPPGDAGFGVPGDRGFPGFPGRKGLPGPVGEAGIG
YPGTAGVQGLSGDPGINGLPGEPGLPGAPGQTMPCVIPGETGKPGIPGLPGVPGLKGQPG
PPGLSGRPGLDGVKGERGSPGFGGQPGPQGFPGPRGDPGLPGTTINGFPGIPGKAGRPGL
TGAKGEPGETLGASPGIQGFPGPVGEPGDKGQQGTPGIPGQPGFDGRIGVPGVKGERGAA
GFPGIEGPPGPPGYVRPTVPVRGPPGDPGLPGPLGCQGFPGLKGEKGDPGPGLQGRKGAA
GPSGVPGTQGEKGRPGAPGPARNGIPGRPALKGEKGSPGLVGFSGIPGRDGGAGLPGRKG
LPGIPGQDGLSGERGMKGFKGDRGEPGARGLDFPFVPSDLLKKGDQGDPGANGPPGFPGP
RGDKGFSGLPGRQGLPGQPGGASPVKGLPGDAGFPGRPGSSGFPGTKGASGVLGFPGMPG
PRGDNGDTGLPGLPGSPGQPGVKGEKGDATGAPGPPGAKGLVGNPGFPGGQGAAGELGSR
GFPGVPGVPGQKGLPGDAGRAGLSGLPGLPGSMGLPGYSGERGRTGEPGRPGGPGRIGEK
GLPGSPGLDGLNGLQGPKGQQGVPGVTEGSRPGAPGMNGLKGERGSSRPGQPGFPGPKGN
KGEGGAPGQPGSPGPPGPRGPTTSSNIPGPVGDPGLPGLDGGRGLTGPPGPPGPAGPGTI
QGDRGDSGIPGFPGRPGNRGDPGFPGGRGIPGSLGLKGLRGDPGVGGIPGPQGYFGDPGS
YGNRGPKGPTGKPGSPGLPGIVIGPQLVDAPTGDPGPQGITGPSGSKGSPGEPGSPGRQG
SKGTVGSVGKPGRPGSAGVPGFIGDPGTPGFQGLDGYPGFPGKPGLPGRPGLPGRSIGIG
YTLVKHSQSVQVPMCPQGMAKLWEGYSLLYVEGQEKAHNQDLGLAGSCLPRFNTIPFLYC
TSSELCYYASRNDKSYWLSTTAPIPMMPVAEQQITNYISRCSVCEAPSQAVAIHSQDSSI
PPCPNGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGARGTCFFFN
NKHSFWLTTVERDRQFVQSPESETLKGEKYRDRISRCQVCMKIL
NT seq
4995 nt
NT seq
+upstream
nt +downstream
nt
atgaagctctgggtttgtgtgctcgctgtgatttggtcgctgcagtctgcacatgcgggg
acgaagacttctggaccgtgtgaaggacgtgactgtagtgggggaggatgttcctgtctc
ccaataaaaggcagtaggggtcgccccggacccttggggccggtggggcccagtgggcct
gagggccttggtggtgctccagggcctgtggggcctaaaggagaaagtggtcatgtcggt
cggtcagggccctctggaccaaaaggggacaagggtccgatgggtgttcctggctttccg
ggtaccgatggtgttccaggtcaccctggccaggaagggccaagaggacttccaggagct
gatggttgcaatggaacacggggtgatcccagctttccaggcttcccaggcctacctggc
agatctggaactccagggttgcccggcattaaaggacaaaaaggagaaccagtgtatatt
cctacagacatcacgggtcctcctggctcacctggtccaattggtccagttggtcccact
ggtcccatcggttaccctggccctcctggtccacctggtcctcctgggccaacaggaaac
cctggtcagggttaccaaggagagacaggagagaagggagacgtggggccgcccggcgat
ccaggccggccactagtcaatggaattgtggagttagttggatttccaaaaggagacaaa
ggagctcagggtgacattggctatgctggagaaccaggactcccaggacgacccggacca
ccaggcccttttggtttcactggggaatatggtgagaaaggaattcccggcttaccaggc
ttacgaggtcctcctggtctgaatggaccacgtggagaagatggtacaaatggatatcct
ggagactatggcttacctggacaagatggctttccaggccctaaaggttacagaggagac
ataggtccaccagggccaactgcctatactggtgaaggaggatttctgaaaggtcctaga
ggtgatcctgggtttgatggctatgctggtgaggttggagatgtaggtccagaagggctt
cccggagaacctggtgctcctggatcttctatctcaggctctccaggactgcctgggctg
cctggtcctcctgggtctaggggagagaaaggaaaccctggtcgcacaacctatggtcct
gaagggcagcctggaagtcaaggtttacctggacctccaggccgccctggacctccaggt
cgccctgcaccctttggaccatttgagacatccagcttacctggtccaccaggtccaaaa
ggtgtcagaggacccccaggagaaagaggttacaaagggtttaaaggagaacttggagac
tgtaattgcttgggtggaggaacctctggtccacaaggtccaccagggtttaaggggttc
cctggtctctcaggagtaagtggacagaaaggagaaatcggtgaccaaggatttccagga
cttcgtggactacagggcccaagtggtcgtcctggagagcgaggctttgctgggcgtaaa
ggagagaaggggaactcttactttgctggaagtcaaggacagaagggtgataggggtgag
ccagggcctcttggtcccaaaggtgatattggcaaacctggaagagatggagtctctggt
tcccctggactaccaggaccaccgggagatgctggttttggggtgcctggagacagaggc
ttccctgggtttcctggcaggaagggccttcctggtccagttggcgaggctggcattggc
tatccaggcactgctggtgttcaaggtttgtcaggggaccctggcatcaatggacttcca
ggagaacctggacttccaggggcaccaggacagacaatgccctgcgtaattccaggagaa
actggaaagccgggaattcctggactgccaggagtgccaggcctaaagggtcagcctggt
cctccaggattaagtggacggcctggtcttgatggcgtaaagggtgagagaggaagtcca
ggctttggaggtcaaccaggtccacaaggcttccctggaccaagaggagatccaggttta
ccaggcaccactatcaatggcttcccaggcattccaggaaaagctggtcgtcctgggttg
acaggagcaaaaggagaacctggtgagactttaggtgcctctccaggaatccaaggattt
ccagggccagttggagagcctggagacaaaggtcaacaaggcacccccggaataccaggc
caacctggttttgatgggcgcattggtgtcccaggtgtgaagggtgaacgaggtgcagct
ggttttccaggcatagaaggaccgccaggcccaccgggttatgtccgtccaactgttcca
gttcgagggccacctggcgatcctggattacctggaccactaggctgccaaggtttccca
gggctgaagggtgaaaaaggagatccaggaccgggccttcaaggaaggaaaggtgctgct
ggaccatctggagttcctggaacccaaggagaaaaggggcgtcctggagcacctggtcca
gcacgtaatggaataccaggcagaccggcactaaaaggagagaagggttcgccggggctg
gtggggttctctggaattccaggacgtgacggcggcgctggactcccaggacgtaaaggt
ctgccaggaatcccaggacaggatggtctatctggagaacgtggaatgaagggattcaaa
ggggaccgtggggagccaggtgcacgagggcttgactttccattcgttccatctgatctc
ctgaagaaaggggatcaaggagatcctggagcaaatggcccaccagggttcccaggccca
agaggtgataagggattttcagggttgcctggtcgtcagggcttaccaggtcagcccgga
ggtgcctccccagtcaagggtctccctggcgatgccggatttccagggcgtccaggttct
tctggctttccaggaactaaaggtgcatctggtgttctgggcttccctggaatgcctgga
cccaggggtgataatggagacactggtttgcctggattgcctggtagtccagggcagcct
ggtgtcaaaggtgagaaaggtgatgctactggagcccctgggccccctggagcaaaggga
ttggtgggaaatcctggattcccagggggccaaggtgctgctggtgaactgggttctcgt
ggtttccctggagttccaggggtacctgggcagaagggtctaccaggagatgcaggaagg
gcaggactcagtggtttgcctggactccctggcagcatgggtcttcctggttactcagga
gagaggggtcgcactggtgagcctggacgcccaggaggtcctggccgaataggagagaaa
ggtttacctggctctcctggtttagatggcctcaatggacttcagggacccaaaggtcaa
caaggagtacctggggtgacggagggcagtcggccaggagcccctggaatgaatggtctg
aaaggggaaagaggctcatcacggccaggacagccaggattccctggaccaaaggggaac
aaaggagagggcggtgctcctggtcagccaggttccccaggtcctccaggccctcgtggg
ccaacaacttcgtctaatatcccaggtccagtcggagatcctggtctgcctggactggat
ggtggacgaggtcttactggcccccctggtcctcctggtccggcgggccctggaacaata
cagggagacagaggagattcagggattcctggattccctggacgtcctgggaaccgtggt
gatcctggattcccaggaggacgtggaataccaggcagcctgggacttaaaggattgaga
ggtgaccctggagttggtgggataccaggacctcaaggctattttggagatccaggaagt
tatggtaacagaggaccaaaaggaccaacaggtaagcctggcagtcccggacttcctggg
attgtaattggaccacaacttgtggatgcaccgacaggtgatcctggcccacaaggaatt
actggtccttctggttcgaaaggatcaccaggcgagcctggctcaccaggacgtcaaggt
tctaaaggaacggttggatcagtggggaaacctgggcgcccaggttctgctggagttccg
ggattcatcggagaccctggaacccctggattccaaggacttgacggttatccaggattt
cctggtaaacctggcttaccaggtcgtccaggtctccctggacgcagcattgggattggc
tacactctggtgaagcacagccaatcggttcaggtgcccatgtgccctcagggcatggcc
aagctatgggagggatacagtctgctttatgtagagggacaggagaaggcccataaccag
gatctgggattggctggttcttgtctgcctcgtttcaacaccatccccttcctctactgc
accagcagtgagctctgttactacgccagccgcaacgacaagtcctactggctgtccacc
acagcacccattcccatgatgcctgtggcagagcagcagatcactaactacatcagtcgc
tgttcagtgtgtgaagctccttctcaggcagttgccatccacagccaagactccagcata
cccccctgcccgaatgggtggaggagcctgtggatcggatactctttcctaatgcacacg
gctgcaggggcagagggaggtggtcagtctctggtgtctcccggctcctgcttggaggat
ttccgtgccacgccctttattgaatgcaacggggcccgcggcacatgcttcttcttcaac
aacaagcacagtttctggctgaccactgtggagcgggacaggcagttcgtgcaaagtccg
gagtcggagacgctgaagggagaaaagtaccgcgaccgcatcagccgctgtcaggtctgc
atgaagatcctgtag
DBGET
integrated database retrieval system
