Colossoma macropomum (tambaqui): 118825767
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Entry
118825767 CDS
T09004
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
cmao
Colossoma macropomum (tambaqui)
Pathway
cmao04510
Focal adhesion
cmao04512
ECM-receptor interaction
cmao04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cmao00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118825767 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118825767 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
118825767 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cmao04147
]
118825767 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
cmao00536
]
118825767 (col4a6)
Exosome [BR:
cmao04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
118825767 (col4a6)
Glycosaminoglycan binding proteins [BR:
cmao00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118825767 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
118825767
NCBI-ProteinID:
XP_036452464
LinkDB
All DBs
Position
Unknown
AA seq
1664 aa
AA seq
DB search
MKLWVCVLAVIWSLQSAHAGTKTSGPCEGRDCSGGGCSCLPIKGSRGRPGPLGPVGPSGP
EGLGGAPGPVGPKGESGHVGRSGPSGPKGDKGPMGVPGFPGTDGVPGHPGQEGPRGLPGA
DGCNGTRGDPSFPGFPGLPGRSGTPGLPGIKGQKGEPVYIPTDITGPPGSPGPIGPVGPT
GPIGYPGPPGPPGPPGPTGNPGQGYQGETGEKGDVGPPGDPGRPLVNGIVELVGFPKGDK
GAQGDIGYAGEPGLPGRPGPPGPFGFTGEYGEKGIPGLPGLRGPPGLNGPRGEDGTNGYP
GDYGLPGQDGFPGPKGYRGDIGPPGPTAYTGEGGFLKGPRGDPGFDGYAGEVGDVGPEGL
PGEPGAPGSSISGSPGLPGLPGPPGSRGEKGNPGRTTYGPEGQPGSQGLPGPPGRPGPPG
RPAPFGPFETSSLPGPPGPKGVRGPPGERGYKGFKGELGDCNCLGGGTSGPQGPPGFKGF
PGLSGVSGQKGEIGDQGFPGLRGLQGPSGRPGERGFAGRKGEKGNSYFAGSQGQKGDRGE
PGPLGPKGDIGKPGRDGVSGSPGLPGPPGDAGFGVPGDRGFPGFPGRKGLPGPVGEAGIG
YPGTAGVQGLSGDPGINGLPGEPGLPGAPGQTMPCVIPGETGKPGIPGLPGVPGLKGQPG
PPGLSGRPGLDGVKGERGSPGFGGQPGPQGFPGPRGDPGLPGTTINGFPGIPGKAGRPGL
TGAKGEPGETLGASPGIQGFPGPVGEPGDKGQQGTPGIPGQPGFDGRIGVPGVKGERGAA
GFPGIEGPPGPPGYVRPTVPVRGPPGDPGLPGPLGCQGFPGLKGEKGDPGPGLQGRKGAA
GPSGVPGTQGEKGRPGAPGPARNGIPGRPALKGEKGSPGLVGFSGIPGRDGGAGLPGRKG
LPGIPGQDGLSGERGMKGFKGDRGEPGARGLDFPFVPSDLLKKGDQGDPGANGPPGFPGP
RGDKGFSGLPGRQGLPGQPGGASPVKGLPGDAGFPGRPGSSGFPGTKGASGVLGFPGMPG
PRGDNGDTGLPGLPGSPGQPGVKGEKGDATGAPGPPGAKGLVGNPGFPGGQGAAGELGSR
GFPGVPGVPGQKGLPGDAGRAGLSGLPGLPGSMGLPGYSGERGRTGEPGRPGGPGRIGEK
GLPGSPGLDGLNGLQGPKGQQGVPGVTEGSRPGAPGMNGLKGERGSSRPGQPGFPGPKGN
KGEGGAPGQPGSPGPPGPRGPTTSSNIPGPVGDPGLPGLDGGRGLTGPPGPPGPAGPGTI
QGDRGDSGIPGFPGRPGNRGDPGFPGGRGIPGSLGLKGLRGDPGVGGIPGPQGYFGDPGS
YGNRGPKGPTGKPGSPGLPGIVIGPQLVDAPTGDPGPQGITGPSGSKGSPGEPGSPGRQG
SKGTVGSVGKPGRPGSAGVPGFIGDPGTPGFQGLDGYPGFPGKPGLPGRPGLPGRSIGIG
YTLVKHSQSVQVPMCPQGMAKLWEGYSLLYVEGQEKAHNQDLGLAGSCLPRFNTIPFLYC
TSSELCYYASRNDKSYWLSTTAPIPMMPVAEQQITNYISRCSVCEAPSQAVAIHSQDSSI
PPCPNGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGARGTCFFFN
NKHSFWLTTVERDRQFVQSPESETLKGEKYRDRISRCQVCMKIL
NT seq
4995 nt
NT seq
+upstream
nt +downstream
nt
atgaagctctgggtttgtgtgctcgctgtgatttggtcgctgcagtctgcacatgcgggg
acgaagacttctggaccgtgtgaaggacgtgactgtagtgggggaggatgttcctgtctc
ccaataaaaggcagtaggggtcgccccggacccttggggccggtggggcccagtgggcct
gagggccttggtggtgctccagggcctgtggggcctaaaggagaaagtggtcatgtcggt
cggtcagggccctctggaccaaaaggggacaagggtccgatgggtgttcctggctttccg
ggtaccgatggtgttccaggtcaccctggccaggaagggccaagaggacttccaggagct
gatggttgcaatggaacacggggtgatcccagctttccaggcttcccaggcctacctggc
agatctggaactccagggttgcccggcattaaaggacaaaaaggagaaccagtgtatatt
cctacagacatcacgggtcctcctggctcacctggtccaattggtccagttggtcccact
ggtcccatcggttaccctggccctcctggtccacctggtcctcctgggccaacaggaaac
cctggtcagggttaccaaggagagacaggagagaagggagacgtggggccgcccggcgat
ccaggccggccactagtcaatggaattgtggagttagttggatttccaaaaggagacaaa
ggagctcagggtgacattggctatgctggagaaccaggactcccaggacgacccggacca
ccaggcccttttggtttcactggggaatatggtgagaaaggaattcccggcttaccaggc
ttacgaggtcctcctggtctgaatggaccacgtggagaagatggtacaaatggatatcct
ggagactatggcttacctggacaagatggctttccaggccctaaaggttacagaggagac
ataggtccaccagggccaactgcctatactggtgaaggaggatttctgaaaggtcctaga
ggtgatcctgggtttgatggctatgctggtgaggttggagatgtaggtccagaagggctt
cccggagaacctggtgctcctggatcttctatctcaggctctccaggactgcctgggctg
cctggtcctcctgggtctaggggagagaaaggaaaccctggtcgcacaacctatggtcct
gaagggcagcctggaagtcaaggtttacctggacctccaggccgccctggacctccaggt
cgccctgcaccctttggaccatttgagacatccagcttacctggtccaccaggtccaaaa
ggtgtcagaggacccccaggagaaagaggttacaaagggtttaaaggagaacttggagac
tgtaattgcttgggtggaggaacctctggtccacaaggtccaccagggtttaaggggttc
cctggtctctcaggagtaagtggacagaaaggagaaatcggtgaccaaggatttccagga
cttcgtggactacagggcccaagtggtcgtcctggagagcgaggctttgctgggcgtaaa
ggagagaaggggaactcttactttgctggaagtcaaggacagaagggtgataggggtgag
ccagggcctcttggtcccaaaggtgatattggcaaacctggaagagatggagtctctggt
tcccctggactaccaggaccaccgggagatgctggttttggggtgcctggagacagaggc
ttccctgggtttcctggcaggaagggccttcctggtccagttggcgaggctggcattggc
tatccaggcactgctggtgttcaaggtttgtcaggggaccctggcatcaatggacttcca
ggagaacctggacttccaggggcaccaggacagacaatgccctgcgtaattccaggagaa
actggaaagccgggaattcctggactgccaggagtgccaggcctaaagggtcagcctggt
cctccaggattaagtggacggcctggtcttgatggcgtaaagggtgagagaggaagtcca
ggctttggaggtcaaccaggtccacaaggcttccctggaccaagaggagatccaggttta
ccaggcaccactatcaatggcttcccaggcattccaggaaaagctggtcgtcctgggttg
acaggagcaaaaggagaacctggtgagactttaggtgcctctccaggaatccaaggattt
ccagggccagttggagagcctggagacaaaggtcaacaaggcacccccggaataccaggc
caacctggttttgatgggcgcattggtgtcccaggtgtgaagggtgaacgaggtgcagct
ggttttccaggcatagaaggaccgccaggcccaccgggttatgtccgtccaactgttcca
gttcgagggccacctggcgatcctggattacctggaccactaggctgccaaggtttccca
gggctgaagggtgaaaaaggagatccaggaccgggccttcaaggaaggaaaggtgctgct
ggaccatctggagttcctggaacccaaggagaaaaggggcgtcctggagcacctggtcca
gcacgtaatggaataccaggcagaccggcactaaaaggagagaagggttcgccggggctg
gtggggttctctggaattccaggacgtgacggcggcgctggactcccaggacgtaaaggt
ctgccaggaatcccaggacaggatggtctatctggagaacgtggaatgaagggattcaaa
ggggaccgtggggagccaggtgcacgagggcttgactttccattcgttccatctgatctc
ctgaagaaaggggatcaaggagatcctggagcaaatggcccaccagggttcccaggccca
agaggtgataagggattttcagggttgcctggtcgtcagggcttaccaggtcagcccgga
ggtgcctccccagtcaagggtctccctggcgatgccggatttccagggcgtccaggttct
tctggctttccaggaactaaaggtgcatctggtgttctgggcttccctggaatgcctgga
cccaggggtgataatggagacactggtttgcctggattgcctggtagtccagggcagcct
ggtgtcaaaggtgagaaaggtgatgctactggagcccctgggccccctggagcaaaggga
ttggtgggaaatcctggattcccagggggccaaggtgctgctggtgaactgggttctcgt
ggtttccctggagttccaggggtacctgggcagaagggtctaccaggagatgcaggaagg
gcaggactcagtggtttgcctggactccctggcagcatgggtcttcctggttactcagga
gagaggggtcgcactggtgagcctggacgcccaggaggtcctggccgaataggagagaaa
ggtttacctggctctcctggtttagatggcctcaatggacttcagggacccaaaggtcaa
caaggagtacctggggtgacggagggcagtcggccaggagcccctggaatgaatggtctg
aaaggggaaagaggctcatcacggccaggacagccaggattccctggaccaaaggggaac
aaaggagagggcggtgctcctggtcagccaggttccccaggtcctccaggccctcgtggg
ccaacaacttcgtctaatatcccaggtccagtcggagatcctggtctgcctggactggat
ggtggacgaggtcttactggcccccctggtcctcctggtccggcgggccctggaacaata
cagggagacagaggagattcagggattcctggattccctggacgtcctgggaaccgtggt
gatcctggattcccaggaggacgtggaataccaggcagcctgggacttaaaggattgaga
ggtgaccctggagttggtgggataccaggacctcaaggctattttggagatccaggaagt
tatggtaacagaggaccaaaaggaccaacaggtaagcctggcagtcccggacttcctggg
attgtaattggaccacaacttgtggatgcaccgacaggtgatcctggcccacaaggaatt
actggtccttctggttcgaaaggatcaccaggcgagcctggctcaccaggacgtcaaggt
tctaaaggaacggttggatcagtggggaaacctgggcgcccaggttctgctggagttccg
ggattcatcggagaccctggaacccctggattccaaggacttgacggttatccaggattt
cctggtaaacctggcttaccaggtcgtccaggtctccctggacgcagcattgggattggc
tacactctggtgaagcacagccaatcggttcaggtgcccatgtgccctcagggcatggcc
aagctatgggagggatacagtctgctttatgtagagggacaggagaaggcccataaccag
gatctgggattggctggttcttgtctgcctcgtttcaacaccatccccttcctctactgc
accagcagtgagctctgttactacgccagccgcaacgacaagtcctactggctgtccacc
acagcacccattcccatgatgcctgtggcagagcagcagatcactaactacatcagtcgc
tgttcagtgtgtgaagctccttctcaggcagttgccatccacagccaagactccagcata
cccccctgcccgaatgggtggaggagcctgtggatcggatactctttcctaatgcacacg
gctgcaggggcagagggaggtggtcagtctctggtgtctcccggctcctgcttggaggat
ttccgtgccacgccctttattgaatgcaacggggcccgcggcacatgcttcttcttcaac
aacaagcacagtttctggctgaccactgtggagcgggacaggcagttcgtgcaaagtccg
gagtcggagacgctgaagggagaaaagtaccgcgaccgcatcagccgctgtcaggtctgc
atgaagatcctgtag
DBGET
integrated database retrieval system
