Celeribacter marinus: IMCC12053_1095
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Entry
IMCC12053_1095 CDS
T04098
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cmar
Celeribacter marinus
Pathway
cmar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IMCC12053_1095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmar03019
]
IMCC12053_1095
Enzymes [BR:
cmar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IMCC12053_1095
Messenger RNA biogenesis [BR:
cmar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IMCC12053_1095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
LytR_C
CMS1
GRP
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ALI55043
UniProt:
A0A0P0A920
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All DBs
Position
1091696..1093033
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AA seq
445 aa
AA seq
DB search
MTDFSMLGLQPRLLKLLKDQGLETPTPIQARAIPEVMNGRDVMGLAQTGTGKTLAFGLPL
LHMALTEGSKPSAKTTRALILAPTRELVNQIADTLFPYIKDTHLKLNRVVGGTSINNQIK
RLERGTDILVATPGRLMDLIDRRAITLSETTFLVLDEADQMLDMGFIHALRKLVPMLAKE
RQTMLFSATMSKQMNEIAQSYLTSPVRVEVSPAGKAADKIDQEVHFIPAGDKYDTLKEML
ATHRGDLALVFSRTKHGAERMSKQLQKAGFNAGSIHGNKSQNQRERTIKDARNGQIEVLV
ATDVAARGIDIPAVRHVYNYELPNVPENYVHRIGRTARAGREGKAVAFCAPTELDDFRAI
EKVMKIRIPIATAASWAADDQKAEPKPKQQGRRGNGGGAGGGGGRGGPRRSGGGKPQGAP
KAGGGGRPGHTQQRRSGGGKSKAHG
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgactgatttttctatgctcggccttcagccgcgccttctcaagttgttgaaagaccaa
ggtcttgagacaccaacccccatccaagcccgcgccattcccgaagtgatgaatggccgc
gacgtcatgggccttgcccagaccggtacaggtaaaaccctcgcgtttggcctgccgctg
ttgcacatggcgctgaccgaaggttccaagccctcggcaaaaaccacacgtgcgctgatc
cttgctccgacccgcgagttggtaaaccagatcgctgacacgctgtttccctacatcaaa
gacacgcacctcaaattgaaccgcgttgtaggcggcacttcgatcaacaaccagatcaag
cgccttgagcgtggcacagacatccttgtcgccacgcccggtcgcttgatggacctgatt
gatcgccgcgccatcacgctatccgagacaacattccttgtcctcgatgaggccgaccag
atgctcgacatggggttcatccatgcgctgcgtaaattggtgccgatgctcgccaaagag
cgtcagaccatgctgttctccgccacgatgagcaaacagatgaacgagatcgcgcaaagc
tatctcacatcgcctgtgcgcgtcgaagtgtcccctgcgggcaaggccgccgacaagatc
gaccaagaggtccacttcatccccgcgggcgacaaatacgacacgctcaaagagatgctc
gctacacaccgtggcgatttggcgctggtgttttcgcgtaccaagcatggcgcggaacgc
atgtccaaacagctgcaaaaggcgggctttaacgccggttcgatccacggcaacaaatcg
caaaaccaacgcgagcgcactatcaaggacgcgcgcaatggtcagatcgaagtcctcgtg
gccaccgatgtggcggcgcgtggcatcgacattcctgccgtgcgccacgtctacaactac
gaattgccaaacgtgcccgagaactacgtgcatcgcattggccgcaccgcccgcgcaggc
cgcgaaggcaaagcggtggcgttctgtgcgcccaccgagctggacgatttccgcgccatc
gagaaggtgatgaaaatccgtatcccgatcgcgacagccgcgtcatgggccgcagatgat
caaaaagccgaaccaaaacccaagcagcaaggtcgtcgtggcaacggtggcggcgcaggt
ggcggtggtggtcgcggtggcccacgtcgctccggtggcggcaaaccgcaaggcgcgccc
aaagcgggcggtggcggacgtcctggccacacccagcaacgccgtagcggcggcggcaag
tccaaggctcatggctaa
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