Celeribacter marinus: IMCC12053_1279
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Entry
IMCC12053_1279 CDS
T04098
Name
(GenBank) helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cmar
Celeribacter marinus
Pathway
cmar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IMCC12053_1279
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmar03019
]
IMCC12053_1279
03009 Ribosome biogenesis [BR:
cmar03009
]
IMCC12053_1279
Enzymes [BR:
cmar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IMCC12053_1279
Messenger RNA biogenesis [BR:
cmar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IMCC12053_1279
Ribosome biogenesis [BR:
cmar03009
]
Prokaryotic type
rRNA helicases
IMCC12053_1279
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ALI55227
UniProt:
A0A0P0AAN2
LinkDB
All DBs
Position
complement(1265574..1267634)
Genome browser
AA seq
686 aa
AA seq
DB search
MITPLSDALAERGYDTLTDVQTAVTAPELEQADLLVSAQTGSGKTVGFGLAIAKTLLGDE
IRFGPAASPLALAIAPTRELAMQVARELEWLYAKTGAKVVTCIGGMDARAERRSLERGAH
IVVGTPGRLKDHIMRRALDLDDIRAVVLDEADEMLDLGFREDLEFMLDACPKDRRTLMFS
ATVSKSISQIATNFQRDAVRISTVSEKNQHSDISYQVIQCAPRDAEHAIINLLRYHDSQT
SIVFANTRAAVARLTARFANRGFSVVSLSGELSQDERSHALQALRDGRARVCVATDVAAR
GIDLPNLELVIHADIPTNTEGLLHRSGRTGRAGRKGTSVLIVPDNVAKKAQRLLKWAKID
AEWRGAPTAEEILALDETRLMDDPAWTEALSENEAEFAATLLGKFSPEQIATACLRLYRA
GLSAPEEINVHTGKGPQKDPRETFGPSRWVALSVGRDKNAEPRWLLPLLCRAGNIDKSKI
GKIKMEDTETFVELQEAALQGFMDQLGAGGELEDGVTARAVDGTPSFSAGAPRSPKARFD
GHSGKPRGEKSFGAKPAYDKPRGEKSYGDKPKFDKPRGDKPSYDKPKTDKFTKPARKERD
DAVHAPAKPRKDKPSDKPSGTFKGKPKSAGAGGGYKGAGKPAGKPTGAGKPAGKYDKAGA
GKKPHRKGAAPKGGPKGGDAVLSRKK
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgattacgcccctctctgacgcgcttgccgagcgcggttacgatactttgactgacgtg
caaaccgctgttacggcaccagaattggaacaggcagacttgcttgtctccgcgcaaaca
ggatcgggtaaaaccgtaggcttcggtctggccattgcaaagacactcctaggcgatgag
attcgttttggtcctgctgcttcgcctttggcgctcgcaattgcgccaacgcgcgaattg
gcgatgcaagtcgcccgcgaattggagtggctttacgccaaaaccggcgcaaaagttgtg
acctgtattgggggcatggatgcccgcgcggaacgccgctcattggagcgtggtgcacac
attgttgtgggaacccctggtcgtttgaaagatcacatcatgcgccgcgcgcttgatctt
gacgatatccgtgctgttgtcctcgacgaagccgatgaaatgcttgatctcgggtttcgc
gaagatcttgagttcatgctcgacgcatgccccaaggatcgtcgcacgttgatgttctcg
gccactgtgtccaaatcgatcagccagattgcaacgaatttccaacgcgatgccgtgcgc
atttcgacggtctccgagaaaaaccaacactcagatatttcctatcaggtgatccaatgt
gcgccgcgcgatgccgagcacgcgattatcaacctgttgcgttaccatgacagccagacg
tcgattgtgttcgcaaacacccgcgccgctgttgcgcgtctcaccgcgcgctttgccaac
cgtggcttttcggttgtgagcctgtcgggtgagttgtcgcaagacgagcgcagccatgcg
ttgcaagctcttcgtgacgggcgtgcgcgtgtttgtgtggctaccgatgttgccgcccgc
gggattgatttgccgaacttggaacttgtgatccacgccgacattccgaccaataccgaa
ggtctgttgcaccgctctggccgtacagggcgcgcaggtcgcaaaggcacatctgtcttg
atcgtacctgataatgtcgccaaaaaagcacagcgtttgctcaaatgggcgaagattgac
gctgaatggcgcggtgcgccaaccgccgaagaaatcctcgcgctagatgagacgcgtttg
atggatgacccggcatggaccgaggcgttgagcgaaaacgaagccgagtttgcggcgacc
ctcttgggcaagttcagccccgagcaaatcgcgaccgcgtgtttgcgtttgtaccgcgct
ggtctatctgccccagaagagatcaacgtccacaccggtaagggtccgcaaaaagatccg
cgcgaaacatttggcccgtccagatgggtggcgctttctgtgggtcgcgacaaaaacgcg
gagccacgttggctcctgccgttgttgtgtcgtgcgggcaatatcgacaagtcgaaaatc
ggtaagatcaaaatggaagacacggaaactttcgtggaactccaagaagccgccttgcaa
ggatttatggatcagcttggcgcaggtggcgagcttgaggatggtgtgacggcccgtgct
gtcgatggaaccccatcgttcagcgctggcgcaccacgctcacccaaagcgcggttcgac
ggacatagtggtaaaccccgcggcgaaaagtcgtttggtgcaaagcccgcctacgacaaa
ccccgtggtgaaaagagctatggcgacaagcctaagttcgacaagccgcgtggcgataag
ccaagctacgacaagcccaagaccgacaagtttaccaagcctgctcgtaaagagcgcgac
gatgccgttcacgcacctgcaaagccacgcaaggataagccgagcgataagccgtctggg
acgttcaaaggcaagccaaaatccgcgggtgcgggtggtggttataaaggtgcgggtaaa
cctgcaggcaagccaacgggcgcaggcaagcccgctggaaaatatgacaaagcgggcgca
ggtaaaaagccacatcgcaaaggggccgcccccaaaggtgggccaaagggcggcgatgct
gttctgagccgcaagaaataa
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