KEGG   Celeribacter marinus: IMCC12053_589
Entry
IMCC12053_589     CDS       T04098                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
cmar  Celeribacter marinus
Pathway
cmar02024  Quorum sensing
cmar03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cmar00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    IMCC12053_589
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    IMCC12053_589
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cmar03019]
    IMCC12053_589
   03036 Chromosome and associated proteins [BR:cmar03036]
    IMCC12053_589
Messenger RNA biogenesis [BR:cmar03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     IMCC12053_589
Chromosome and associated proteins [BR:cmar03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    IMCC12053_589
SSDB
Motif
Pfam: Hfq Hfq_1 LSM AcMNPV_AC11
Other DBs
NCBI-ProteinID: ALI54537
UniProt: A0A0P0A2P5
LinkDB
Position
complement(589573..589812)
AA seq 79 aa
MAGDKQNLQDAFLNHVRKTKVPVTIFLINGVKLQGVITWFDNFCVLLRRDGQSQLVYKHA
ISTIMPAQPISLYDGEDAQ
NT seq 240 nt   +upstreamnt  +downstreamnt
atggccggtgacaaacaaaatctccaagacgcgttcctcaatcacgttcgcaaaaccaaa
gttccagtgacgatctttttgatcaatggtgtgaagttgcaaggcgtcatcacatggttt
gataacttttgtgttttgctgcgccgcgatggtcagtcgcaacttgtatacaagcacgcg
atttccacgattatgcccgcacagcctatcagcctttatgacggtgaagacgcgcagtaa

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