Corynebacterium massiliense: CMASS_04220
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Entry
CMASS_04220 CDS
T08886
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cmas
Corynebacterium massiliense
Pathway
cmas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CMASS_04220 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmas03019
]
CMASS_04220 (deaD)
03009 Ribosome biogenesis [BR:
cmas03009
]
CMASS_04220 (deaD)
Enzymes [BR:
cmas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CMASS_04220 (deaD)
Messenger RNA biogenesis [BR:
cmas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CMASS_04220 (deaD)
Ribosome biogenesis [BR:
cmas03009
]
Prokaryotic type
rRNA helicases
CMASS_04220 (deaD)
BRITE hierarchy
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
CHASE3
UvrA_inter
adh_short
PIN_9
Motif
Other DBs
NCBI-ProteinID:
WCZ32295
LinkDB
All DBs
Position
886792..888732
Genome browser
AA seq
646 aa
AA seq
DB search
MSITDNAAGSENQPEEQATLSESQNESQGGASAQDTGDATASEATGAEDNNSATEKSQGF
ADLGLPDDIQKAVSKVGFTEPSPIQSETIPLLMQGRDVVGLAQTGTGKTAAFALPILARI
DAEKRHPQALVLAPTRELALQVADSFQSFADHLGKLEILPIYGGQAYGIQLSGLRRGAQI
IVGTPGRVIDHLEKGSLDISQLEYLVLDEADEMLNMGFQEDVERILEDTPEDKQVALFSA
TMPNGIRRLSKNYLDNPAEVTVKAQARTNDNISQRYLMIPHRAKMAAFTRILEVIDSDAI
IVFCRTKQETEEVAEKLSDRGFNAAAINGDIAQNQRERTVDQLKDGRLDILVATDVAARG
LDVERITHVINYDIPRDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERVTKARL
EEMDLPTVEEVNEKRTQKFQQRISAALGDKQMDFFRQLVRDYSQDNDTAMDDIAAAIAVM
AQDGKDFLMKDEPLPKADRKERGKGRDRDRGPRGGKDRGGRGHHSDANFETYRLDVGKRQ
NVRPGAIVGAIANEGGLSAKDFGRITIAVGHTLVDLPKNLDPAVLDRLKDTRISGQLINI
QKDPGRPPRRDRDGRKDGRGHRGGGRGHGHGRDHGRDGGYGKGRRD
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgagcattaccgataacgctgccggcagcgagaatcagccggaagaacaagcaactttg
tcggaatctcagaacgaatcgcagggtggggcttcggcccaggacaccggggacgcgaca
gcttctgaggctaccggcgccgaggacaacaactcggccactgaaaaatcccaggggttc
gcggatctcggtcttcctgacgacatccagaaggccgtctccaaggtcgggttcaccgaa
ccttcccccatccaatccgaaaccatcccgctgctgatgcagggccgcgacgtcgtcggc
ttggcacagacgggcacgggtaagaccgccgcctttgcgctgccgatcctggcgcgtatc
gatgccgaaaagcgccatccccaggcgctcgtgctcgccccgactcgcgagctggccttg
caggtcgccgactccttccagtcgttcgccgatcacctgggcaagctggagatcttgccg
atctacggcggacaggcatacggcattcagctgtccggtctgcgccgtggcgcgcagatc
atcgtaggtacgccgggccgtgtcatcgaccacctggagaagggctcgctggacatctcc
cagctcgaatacctggtgctcgatgaggccgacgagatgctcaacatgggcttccaggaa
gacgtcgagcgcatcctggaagacaccccggaggacaaacaggtcgcgctgttctcggcg
acgatgccaaatggcatccgccgcctgtccaagaactacctggacaacccggccgaggtg
accgtcaaggcgcaggcgcgcacgaacgacaacatctcgcagcgctacctgatgatcccg
caccgcgcgaagatggcggcgttcacccgcatcctcgaggtcatcgattcggacgccatc
atcgtcttctgccgcaccaagcaggagaccgaggaggtcgccgaaaagttgagtgaccgc
gggttcaatgctgcggccatcaacggcgacatcgcccagaaccagcgcgagcgcaccgtc
gatcagttgaaggacggacgcctggacatcctcgtggctaccgacgtggccgcgcgcggc
ctcgacgtcgagcgcatcacccacgtcatcaactacgacatcccgcgcgataccgagtcc
tacgtgcaccgcatcggccgcaccggccgcgcgggccgcagcggcgaggcgatcctgttt
gtcaccccgcgcgagcgccgcatgctgcggtctattgagcgcgtgaccaaggcgcgcctg
gaagagatggatctcccgaccgtcgaggaggtcaacgagaagcgcacccagaagttccag
cagcgcatctctgcggccctgggcgacaagcagatggacttcttccgccagctcgtgcgc
gactactcgcaggacaacgacaccgcgatggacgacatcgccgccgcgattgcggtcatg
gcgcaggacggcaaggacttcctcatgaaggacgagccgctgccgaaggctgaccggaaa
gaacgcggtaagggacgcgaccgagatcgcgggccgcgcggcggcaaggaccgcggcggc
cgcggccaccacagtgatgccaactttgagacctaccgcctcgatgtgggcaagcgccaa
aacgtccggccgggcgccatcgtgggtgctattgccaacgaaggcgggctgtctgcgaag
gacttcgggcgcatcaccatcgcggtgggccacaccctggtcgatttgccgaagaacctg
gacccggcggtgctggatcgcctgaaggacacccggatttccggccagctgatcaacatc
cagaaggacccgggccggccgccgcgccgcgaccgcgacggccgcaaggacggccgcggg
caccgcggcggcgggcgtggtcacggccacggtcgcgaccacgggcgcgatggcggctac
ggcaagggccgccgcgactaa
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