Corynebacterium matruchotii: HBA49_01275
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Entry
HBA49_01275 CDS
T07153
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cmat
Corynebacterium matruchotii
Brite
KEGG Orthology (KO) [BR:
cmat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmat03019
]
HBA49_01275 (hrpA)
Enzymes [BR:
cmat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HBA49_01275 (hrpA)
Messenger RNA biogenesis [BR:
cmat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HBA49_01275 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
HA2_N
AAA_25
nSTAND3
NACHT
T2SSE
SLFN-g3_helicase
PhoH
Motif
Other DBs
NCBI-ProteinID:
QIP44314
LinkDB
All DBs
Position
complement(1097099..1101127)
Genome browser
AA seq
1342 aa
AA seq
DB search
MPSKQQLEDELSQLSIADERRFRRRLAKARSPKALSAIAADMMTARESVDKRARSIPTIT
YPEQLPVSARKDDIADAIRDHQVVIIAGETGSGKTTQIPKICLDIGRGRRGLIGHTQPRR
LAARTVAERIADELGQRIGESVGYAIRFDDQVGPQTAVKLMTDGILLAEMQHDRYLNAYD
TIIIDEAHERSLNIDFLLGYLKQLLPKRPDLKVIITSATIDPERFAAHFADQDGNPAPII
EVSGRTYPVEVLYRPLQVESGGKLIDIDPLDGLLSAIEELMEYGDGDILCFFPGEADIRD
AMEAIAGKRWRNVDVVPLFGRLSNQEQHRVFSPHAHRRIVLSTNIAETSLTVPGIHFVVD
TGTARISRYSTKTKVQRLPIEDISQASANQRSGRCGRVADGIAIRLYSEEDYLSRPKFTD
PEILRTNLASVILQMAALKLGNIEDFPFVQAPDTRAIRDGIILLKELGALEDSDNNTNLP
KLTPIGRDIARLPVDPRMARMIIEARRLGCLREVQVIVAALSIQDVRERPLEYQAQADQL
HARFKNKTSDFLGYLKLWDYIARSREELSGNAFRNRMRKEFLHYLRIREWFDLVRQLKSV
CGQLGWTTDDAALDRYVPEAKQLHSSQPGNRGNHQGQRGSVQSPTSQADADEVIGAEQAD
AVHQSLLSGLLSHIGIRNVDTREYQGARNTKFMVFPGSALAKTNPQYVMAAELVETSRLW
ARDVASIDPRWVERLAANLLKSTYSEPHWSSKRAAAMAYQRSTLYGVPVVADRLVPYHTI
DPVAARDMFIREALIAGDWRTHHKFFHRNAEKLQAATELEERARRRDIVVDEDTLFDFYD
SRLPEHITTGTRFDQWWKKTQRTQPNLLDFDPAALVHHAADSVTETDFPTTWVYTAGGET
LHFDLTYRFVPGEPDDGVTVHVPVPLLAGLQPTGFEWLVPGMREDLVTELIRSLPKQVRR
HVVPAPDYARRVVPLLDSRRTESLRAQLAAALTEVSGHVISPEEFRFDSLPAHLRMLFAA
VDRRGKIIDSDKDLSALKHRRATQIQSSVSQAGRRVEQDSVSEWTADTLGAIPSEIFTKV
DGQRVAAYPALMATPEGVAVKVFGTRAEADASMMTATLTLLLRKIPVPAQKMVNGLPLRQ
RVGVENYPHGGVSGLVADARVAATRDLLVRHGGPVRDPGEFAELLAKIRPEVPGLVRQMI
VELAPALMEFVALRQELANWTGEAITDMQAQLEFLVPKNALAVHGIGRLKHLGRYVKAMR
MRLDDMGVQPDRDARRQAVIHGLEAALAARLAKMPAARAKSAAVKDIYWLLQELRVSLFA
QTLGTAQKVSESKISKAIAALR
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atgcctagtaaacaacaattagaagacgaactttcccaactgagtattgctgatgagcgc
aggttccggcgtcgattagcgaaggcccgctctcctaaagcattatcagccattgcggcg
gacatgatgaccgcccgagaaagcgtcgacaagcgggctcgtagcattccaactatcacc
tacccggagcagttaccggtatccgcacgtaaagacgatatcgcggatgctattagggac
catcaggtagtaatcattgctggtgaaaccgggtcaggcaaaaccacgcagattccgaaa
atttgtttggatattggtcggggtcgacggggactcattgggcacacccagccgcgccgg
ttagccgctcggaccgtggcggagcgcattgccgacgaattagggcagcgcatcggcgaa
agcgtcggctatgccatccggtttgacgatcaggtgggcccgcaaaccgcggtaaaactt
atgaccgatggcattttgctcgcagaaatgcagcatgaccgctaccttaatgcttacgac
accattatcattgacgaggcccatgagcgaagcctcaatattgattttttgctcggctat
ctcaaacaattactgcctaaacggccagacctcaaggttattatcacctctgcaacaatc
gacccggagcggtttgcggcacatttcgcagatcaagacggcaacccggcgccgatcatt
gaggtatcgggccgcacctaccccgtcgaagtgctctaccgcccgctccaggtggagtcc
gggggtaaactcatcgacatcgacccactggacgggttactttccgccatcgaagaactc
atggaatatggcgatggtgacattttatgctttttcccgggggaggcggacattcgtgac
gccatggaagccatcgccgggaaacggtggcgcaatgttgatgtggttccgcttttcggt
cggctatccaaccaggaacagcatcgcgtttttagcccccacgcccaccggcgcattgtg
ttatccaccaacattgccgaaacgtcgctgaccgtgccgggcattcatttcgtggtcgat
accggcaccgcaagaatctcccgctattccacaaaaaccaaagttcagcgcctccctatt
gaagatatttcgcaggccagcgcgaatcaacggtcgggtcgatgcggtcgggttgccgat
ggtatcgccatccgactctattccgaggaggattatttaagccgccccaagtttacggac
ccagagattctgcgcaccaatttagccagtgttatcctgcaaatggcggcgctcaaactg
ggcaatattgaagactttcccttcgttcaggcccccgacacccgcgccatccgggatggc
ataatattactgaaagaattaggcgccctagaggactcggataataacacgaatctgcct
aaacttactcccattggtcgggatattgcgcggctgccggtagacccgcgcatggcacga
atgatcattgaggcccgacggctgggctgtcttcgggaagtccaggtcattgttgccgcg
ctgtcgatccaggatgtgcgcgaacgtccgctcgaataccaggcgcaggcagatcaatta
catgcccgttttaaaaacaaaacctcggattttcttggttatctaaaactgtgggactac
attgctcggagccgggaagaactcagcggcaatgccttccgtaaccgaatgcggaaggaa
ttcctccattacctgcgcatccgggaatggttcgatttggtgcggcaattaaaatccgtg
tgtgggcagctcggttggaccaccgacgatgccgccctcgaccggtacgtgcccgaggcg
aaacagctgcacagttcccagcctggcaaccgcggtaaccaccagggacaacggggtagt
gtgcaatcccccaccagccaggcagatgcagacgaggtgataggcgctgaacaggccgat
gcggtccaccagtctctgttgtccgggttgctgtcgcatattggtattcggaatgttgac
acccgggaataccagggtgcccgcaacactaaattcatggtcttccccggctccgcgctg
gcgaagaccaacccgcagtacgtcatggccgcggagttggtggagacctcaaggctgtgg
gcccgcgacgtggccagcatcgacccccgctgggtggaacggcttgcggcaaacctgctg
aaaagcacgtattccgaaccgcattggtccagcaaacgggccgccgccatggcataccaa
cgctccacactctatggggtgccggtcgtggccgaccggctggtcccctaccacacgatt
gacccggtggcggcccgggacatgtttatccgggaggcgttgatcgccggggattggcgc
acccaccacaagtttttccaccgcaatgcggaaaaacttcaagctgccaccgagttagag
gagcgcgcccggcggcgtgacattgtggtcgacgaggacaccctgtttgacttctatgat
tcccgactgccggagcacatcaccaccggcacccggtttgaccagtggtggaagaagacg
cagcgcacccaaccgaacctgctggatttcgatccggcagccctagtacatcatgccgca
gattccgtgaccgaaacggattttcccaccacctgggtgtataccgccggtggtgaaacg
ttgcattttgatttgacatatcgcttcgtcccaggcgagcccgacgatggggtaactgtg
cacgtgccggtgccattattggcggggttgcagccgaccggttttgagtggttggtcccg
ggcatgcgggaggatttggtgaccgaactgattcggtccttgcccaagcaggtgcggcgg
catgtggtgcccgcgccggattatgcccggcgggtagtgccgctgttggattcgcgccga
accgaatcattgcgggcgcagttggcagctgcgttgaccgaggtgagcggccatgtgatc
agcccggaggagttccggttcgattccctgcctgcccatttacgcatgctgtttgccgcg
gtggatcggcgggggaagatcattgattccgataaagatctttcggccctcaagcaccgg
cgggcgacacaaatccaatcatcggtgtcgcaggcgggacgccgggtggagcaggattcc
gtgtctgagtggacggcggacaccctgggggcgatcccgtcggagattttcacgaaggta
gatgggcagcgggtagcggcatacccggccctgatggcaaccccggaaggggtggcggta
aaggtgtttgggacgcgcgcggaggcggatgcgtcaatgatgacggcaacgctcacgctc
ctgctgcggaagattccggtcccagcacagaaaatggtgaatggcctgccgctacggcag
cgggtgggggtggagaattatccacacgggggtgttagtggcctggtggcggatgctcgg
gtagcagccacccgggaccttttggtgcggcatgggggtccggtgcgggatcccggcgag
tttgccgagttgctggccaaaatccgcccagaagtgccggggttggtacggcaaatgatt
gtggagttagcgccggccttgatggagtttgtggcgctgcggcaggagttggcgaattgg
acgggtgaggcgatcacggacatgcaggcgcagctggagtttttggtgccgaaaaacgcc
ttggcggtgcatgggattggccggctgaagcatttaggccggtacgtcaaggcaatgcgc
atgcgcctggatgacatgggggtgcagccggatcgggacgcgcgccggcaggctgtgatc
catggattggaggccgcattggctgcccggcttgcaaagatgccggccgctcgggccaag
tccgctgcggtgaaggatatttattggttgttacaggaattacgggtcagtctgtttgcg
caaacattagggaccgcacagaaggtgtcggagtcgaagatttccaaggcgattgcggcc
ctgcggtag
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integrated database retrieval system
