Corynebacterium matruchotii: HBA49_01335
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Entry
HBA49_01335 CDS
T07153
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cmat
Corynebacterium matruchotii
Brite
KEGG Orthology (KO) [BR:
cmat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cmat03016
]
HBA49_01335
Enzymes [BR:
cmat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HBA49_01335
Transfer RNA biogenesis [BR:
cmat03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HBA49_01335
Prokaryotic type
tRNA splicing ligases
HBA49_01335
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QIP44326
LinkDB
All DBs
Position
1082864..1084084
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AA seq
406 aa
AA seq
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MHHPFGLPETLPGTHAPARIWAPLVDVDHAAQRQIRAVADLPWTHGVAIMPDVHVGAAVT
IGSVIAMRDAVSPAAVGGDIGCGMMAVRTNLTTSDLPNNLAPLRAAWEAAIPVGPNHHTT
RAPILKTHGLIRQRLTRHFRRFTDLSVDVSASEQTAIRQCGTLGGGNHFIELCADTTETI
WLTLHSGSRNIGKEIAHRHIGRAKTLDWNRHGPNHNLPVILRKDATGAEQTEWADYLHDL
TWAQNYAALNRTIMMATIKTALHNLLPQVRYTTEIDCHHNYVAIEHHDGVELAITRKGAI
SATSGEWGIIPGSMGTGAAIVRGLGNPAAYCSASHGAGRIMSRSEARRSFTLDDLAHQTA
GVECRKDPGVLDEIPGAYKNLDQVLAYEQDLVTVETNLTTLLCVKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgcatcatcccttcggcctgcccgaaaccctccctggtacccacgcgcccgcccgcatt
tgggcgccactcgtcgacgtcgatcatgcggcacaacgccaaatccgggcggtcgccgac
ctgccctggacccacggggtggccatcatgcccgacgtgcatgtgggcgccgccgtcacc
attggcagcgtcatcgccatgcgcgacgcagtatcccccgcagccgtcggcggcgacatt
ggctgcggcatgatggccgtccgcaccaacctcaccaccagcgatcttcccaacaacctt
gccccactccgggccgcatgggaagccgcgataccggtcggccccaaccaccacaccacc
cgtgcccccattctgaaaacccacgggctcatccgccaacgactcacccgccacttccgg
cgcttcaccgacctcagcgtcgacgtgtccgcaagcgaacaaaccgctatccgccaatgc
ggcaccctgggcggcggcaaccacttcatcgaactctgtgctgacaccaccgaaaccatt
tggctcacactgcactccggctcccgaaacattggcaaagaaatcgcccaccgccacatt
gggcgggcaaaaaccctggactggaaccgccacggccccaaccataacctccccgtcatc
ctccgcaaagacgccaccggggcggaacaaaccgaatgggcggactaccttcacgacctc
acctgggcccaaaactatgccgctctcaaccgaaccatcatgatggccaccatcaaaacc
gcactccataacctcctgccccaagtgcgctacaccacggaaatcgactgccaccataac
tacgttgccatagaacaccacgacggggtggaattggccatcacccgcaaaggtgccatc
agcgccaccagtggtgagtggggaatcatccccggatccatgggcaccggggccgccatc
gtgcgcggcctcggcaacccggcagcctactgctccgcatctcacggcgccggccgaatc
atgagccgcagcgaggcccgccgcagcttcaccctcgacgaccttgcccaccaaaccgcc
ggggtggaatgccgtaaagacccaggcgtgctcgacgaaatcccgggcgcctacaaaaac
ctcgaccaggtcctcgcctatgaacaagacctggtgactgtcgaaaccaacctcacgacc
ctcctctgcgtcaagggctaa
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