Corynebacterium matruchotii: HBA49_12245
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Entry
HBA49_12245 CDS
T07153
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cmat
Corynebacterium matruchotii
Brite
KEGG Orthology (KO) [BR:
cmat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cmat03016
]
HBA49_12245
Enzymes [BR:
cmat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HBA49_12245
Transfer RNA biogenesis [BR:
cmat03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HBA49_12245
Prokaryotic type
tRNA splicing ligases
HBA49_12245
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QIP46506
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All DBs
Position
1512475..1513650
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AA seq
391 aa
AA seq
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MKPHQPKDVVSFASELEESTLEQAQQLAKLPFIYPHVALMPDAHTGLGSSVGTVFGTIDA
VIPAAVGVDIGCGMIAVRTQFTATDLAGKDLTQLRDAIEAAIPLSPGNYNKDWILPGSAD
DRCRELAKLAEETDVDLSHSPKWRQQLGSLGGGNHFIELCLDETDTVWMFLHSGSRGVGN
KIAQKHIAIAKKLMAKWWIPIENNDLAYLVQGTPEFGNYIKDLHWAQRFAFLNREEMMDR
FSTCLSEFMGTDVEEVERINCHHNYTQREEHAGHTVWLTRKGAVNADEGRLALIPGSMGT
ASYVVEGKGNIQSLHSAPHGAGRRYSRTEARRRFTVEDLASRMTGIVYRPGEAWIDEIPD
AYKDIDQVMADSRDLVEIKHKLRQVMNVKGT
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
ttgaagccccaccagcccaaggacgtggtgtcctttgcttcagagttggaggaatccacg
cttgagcaagcccagcagctggcaaaactgccgtttatttacccgcatgttgcgctcatg
cccgacgcccacaccgggttagggtcgtcggtgggaaccgtgttcggcaccattgatgcc
gtgattcccgccgccgtgggcgtcgacatcggatgtggcatgattgccgtgcgcacccaa
ttcacagccaccgatttggcgggtaaggatcttacccaactgcgggacgccatcgaagcc
gccattccgctgtcgcctggcaactataacaaggactggatcctgccgggttctgccgac
gatcgatgccgggagctggcgaaactagcggaggaaaccgatgttgacctgtcgcattcg
ccgaagtggcggcagcaattagggtcgctgggcggcggcaaccacttcattgagctgtgt
ttggatgaaaccgataccgtgtggatgttcctgcactcgggttcccgcggcgtgggcaat
aagattgcccaaaaacacatcgccattgcaaagaaattaatggcgaagtggtggattccc
atcgaaaataacgacctggcctacctggtgcagggcactccggaattcgggaactatatc
aaggatttgcactgggcgcagcggtttgcgttcctcaatcgggaggaaatgatggaccgg
tttagcacctgtttgtccgagtttatgggcaccgatgtggaggaagtggagcgcattaac
tgccaccacaactacacgcagcgggaagagcacgccggccacacggtgtggttgacccgc
aagggtgcggtgaatgcggacgagggtcggctggcgctgatccccggttcgatgggtacc
gcctcctatgtggtggaaggcaagggcaatatccagtcgctgcattcggcaccgcatggg
gccggccgccgctattcccgcacggaggcgcgccgccggtttaccgttgaggatctggcg
tcccgcatgaccggtatcgtgtaccgtccgggcgaggcgtggatcgacgagattcccgac
gcctataaggatatcgaccaggtcatggcggattcccgcgaccttgtggagatcaagcat
aagctgcgccaggtcatgaatgtcaagggcacataa
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