Chitinibacter mangrovi: ABHF33_05725
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Entry
ABHF33_05725 CDS
T11125
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cmav Chitinibacter mangrovi
Pathway
cmav03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cmav00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ABHF33_05725 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmav03021
]
ABHF33_05725 (rpoC)
03400 DNA repair and recombination proteins [BR:
cmav03400
]
ABHF33_05725 (rpoC)
Enzymes [BR:
cmav01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ABHF33_05725 (rpoC)
Transcription machinery [BR:
cmav03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ABHF33_05725 (rpoC)
DNA repair and recombination proteins [BR:
cmav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ABHF33_05725 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
XBM01772
UniProt:
A0AAU7FB47
LinkDB
All DBs
Position
complement(1227431..1231654)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKGLLELFKQVAQDEEFDAIKIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDIALRDIERVLYFEAFIVIEPGMTPLQRGQLLTEEDYFSKVEEYGDEFVAMM
GAEAVRELLKSMDVDQEISRLRSELESTGSETKIKKIAKRLKVLEAFERSGIKPEWMILE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELRAPEIIVRNEKRMLQ
ESVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKLMALELFKPFIFHKLEVMGLATTIKAAKKMVESQEPVVWDILEDVIREHP
VLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVLAPANGEPIIVPSQDIVLGLYYMTREAKYAKGERLNDDGQRLTIFSNVSE
ALRAYANKDVTLQTRVSIRLKEWFKNESGEWESKMVRRDTTVGRAILSEILPKGLDFSHI
DKSLKKKEIGKLINASFRRCGLKDTVVFADQLMYTGFSYSTRGGISICVDDMLVPAKKVE
LLAAAQSEVKEIEQQYSSGLVTQGERYNKVVDIWGRAGDQIAKAMMDQLGKEPVLDANGK
QDEQESFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIEMPITTNFREGLTVLQY
FISTHGARKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTKNGVAMKAVVQGGDVV
EALRERILGRVVVKDVVDPSSQETLFEAGYLLNEDAVDEIELRGVDEVVVRTPLSCETRY
GLCAKCYGRDLGRGHLVNSGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAANQVEA
KSSGNIAYSSNMRYVTNAKGEPVVIARSAEVLILDDNGRERETHKVPYGATLTVKDGDVI
KAGTVLGTWDPHSRPIITEYSGTVKFENVEEGMTVVKQVDDVTGLSTLVVIASKAKVTSS
KGLRPLVKLIDEFGNEMKLAGTDTPVTISFQVGSIITVKDGQQVGVGDVLARIPQESAKT
RDITGGLPRVAELFEARSPKDAGMLAEVTGTASFGKDTKGKQRLVLTDLEGVAHEYLISK
DKHVMVHDGQVVNRGETIVDGPIDPHDILRLQGIEALARYIVHEVQEVYRLQGVKINDKH
IEVIVRQMLRRVVISDSGGSDFILGEQVERAEVLIANDKLAAEGKELAKYDNILLGITKA
SLSTDSFISAASFQETTRVLTEAAIMGKVDDLRGLKENVIVGRLIPAGTGLAYHKNRKRL
QSKVESLLPFAEVAAEVMAESSGEVSE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggcttactcgaactcttcaagcaagtcgcacaagacgaagaatttgacgcgatt
aaaatcgggctcgcatcgcctgagaaaatccgttcttggtcttttggcgaagtgaagaag
ccagaaaccatcaactatcgtacgttcaagcctgagcgtgatggtctattttgtgctcgt
atttttggcccaattaaagattacgaatgtttgtgcggtaagtacaaacgtctgaaacac
cgtggcgtgatttgtgaaaaatgtggcgttgaggtgactttgtctaaagtccgtcgcgaa
cgcatgggtcacattgagctggctagtccagttgcgcacatctggttcctgaagtcattg
ccatctcgtttgggtatggtattggatatcgctttgcgcgatatcgagcgtgtactgtat
ttcgaagcgttcatcgtgatcgagccaggcatgacgccgctgcagcgtggccaattgctg
actgaagaagactacttctctaaagtcgaagaatacggcgatgaatttgtcgcaatgatg
ggcgctgaagcggttcgcgaattgctcaagtcgatggacgttgatcaagagatcagccgt
ctgcgttctgagttggaaagcaccggctctgaaactaagatcaagaaaattgcgaaacgc
ttgaaagtattggaagcgtttgagcgttcaggtatcaaacctgagtggatgattttggaa
gtattgccagtcttgccgccagaattgcgtcccttggtgccattggatggcggtcgtttt
gcgacttccgatctgaatgatctgtatcgccgcgtgattaaccgtaataaccgtctgaaa
cgtctgctcgaattgcgcgcgcctgaaatcatcgttcgcaacgaaaagcgtatgttgcaa
gagtcggttgactcattgctcgataacggccgtcgcggtaaagcgatgactggcgcgaac
aagcgtccgctgaagtcactggctgacatgatcaaaggtaagggcggtcgtttccgtcag
aacttgctgggtaaacgtgttgactactcaggtcgttcggtgattaccgtaggcccaact
ttgcgcctgcatcagtgcggcctgccaaagttaatggcattggaattgttcaaaccgttc
attttccataaattggaagtgatgggtctagcaacgacgattaaagccgcgaagaaaatg
gttgaaagccaagagccggtagtttgggatatcttggaagacgtgatccgcgagcatccg
gttctgctcaaccgtgcgccaacgctgcaccgtttgggtattcaagcgtttgaaccgacg
ctgatcgaaggtaaagcgattcagttgcacccgctggtttgtgcggcattcaatgccgac
tttgacggtgaccagatggcggttcacgttccattgtcgctggaagcgcaaatggaagcg
cgtacgctgatgttggcgtcgaataacgtattggcaccagccaatggcgagccaatcatc
gtaccgtcgcaggacatcgtcttgggtctgtactacatgactcgcgaagcgaaatacgcc
aaaggcgagcgtttgaacgacgatggtcagcgtctgactatcttctctaacgtgtctgaa
gccttgcgcgcatacgctaacaaagatgtaacactgcaaactcgtgtttcaattcgcctg
aaagaatggttcaaaaatgaatctggcgaatgggaaagcaagatggttcgtcgtgatacg
acggttggccgcgcgatcttgtctgaaatcctgccaaaaggtctggatttctcgcatatc
gacaagtcattgaagaaaaaagaaattggtaagctgatcaatgcctctttccgccgctgc
ggtttgaaagatacagtcgtatttgctgaccaattgatgtacaccggtttctcatactct
acgcgtggcggtatctcgatttgcgtcgatgatatgttggttcctgcgaagaaagttgag
ttgctggcggctgcgcaatctgaagtgaaagagatcgagcagcaatacagctcaggtctg
gtaactcagggcgagcgttacaataaggttgtcgatatctggggccgtgccggtgatcag
atcgcgaaagcgatgatggatcaactaggtaaagagccagtacttgacgccaatggcaag
caagatgagcaagagtcgttcaactcgatttacatgatggctgactcaggtgcccgtggt
tcggcagcgcagattcgtcagttggctggtatgcgtggtctgatggctaagcctgatggc
tcgattatcgagatgccgattacgaccaacttccgtgaaggtttgacggtacttcagtac
ttcatctcaacacacggtgcacgtaaaggtctggcggatacggcattgaagacagcgaac
tcgggttacctgactcgtcgtctggtcgatgtgacgcaagacttggtggtgatcgaagat
gattgcggcacgaagaacggtgtagcgatgaaagctgtggttcaaggtggtgacgttgtt
gaagccttgcgcgagcgtatcttgggtcgtgtagtggttaaagacgtggttgatccatcg
tcacaagaaacattgtttgaagcgggctacctgctcaatgaagacgcggtagatgaaatc
gaactgcgtggtgttgatgaggtggttgtacgtacgccgctgtcgtgtgaaacccgctat
ggcctgtgcgccaagtgttatggccgcgatctgggtcgtggtcatctggttaatagtggt
gaagcagtgggtgttattgctgctcagtcaatcggtgagcctggtactcagttgacgatg
cgtaccttccacatcggtggtgcggcatctcgagctgcagcggccaatcaggttgaagct
aaatctagcggtaatatcgcttatagctccaacatgcgctatgtgaccaatgcgaaaggt
gagcctgttgttatcgctcgttcggccgaagtgctgatcttggatgacaatggtcgcgaa
cgtgaaacgcataaagtaccttatggtgcaacgctgacagtaaaagacggcgatgtcatc
aaggctggtactgtgttgggtacttgggatcctcactcgcgtccaatcattactgagtac
tcaggtacagtgaagtttgaaaacgttgaagaaggcatgaccgttgttaagcaagtcgat
gatgtaacaggtttgtcgacgttggtggttattgcttctaaagcgaaagtaacttcaagc
aaaggtctgcgtccattggtgaaattgatcgatgaatttggcaatgaaatgaagctggct
ggtactgatacgccagtaacaatttcgttccaggttggctcgattattactgtgaaagat
ggccagcaagttggtgtgggtgatgtattggctcgtattccacaggaatcagctaagact
cgtgatattactggtggtctgccacgtgtggctgagctgtttgaagctcgctcaccaaaa
gacgcgggtatgctggccgaagtcactggtactgcaagctttggtaaagataccaaaggt
aagcagcgtctcgtattgactgatctggaaggcgtagcccatgagtatctgatctccaaa
gataagcatgtgatggtgcacgatggtcaggtggtgaatcgtggtgagacgattgttgac
ggcccgattgatccgcacgatatcttgcgtctgcaaggtattgaagctctggcgcgttat
atcgttcatgaagtgcaagaggtttaccgcttgcagggtgtgaagattaatgacaagcac
attgaagtaattgtgcgtcagatgttgcgccgtgttgtgatttctgactctggtggttca
gatttcatcttgggtgagcaggttgagcgtgctgaagtgctgattgccaatgacaaattg
gctgctgaaggtaaagagttggccaagtacgacaatatcttgctgggtatcacgaaagca
tcgttgtcgaccgattcgttcatttcagctgcttcgttccaggaaacaactcgcgttctg
accgaagctgccattatgggtaaagtggatgatctgcgtggtttgaaagaaaacgtgatc
gtcggtcgcttgatcccagctggtacaggtttggcttatcacaaaaaccgtaagcgtctg
caaagcaaggtagaatcattgctgccttttgccgaagtcgctgctgaggtgatggccgaa
tcttcaggagaggtgtcggagtaa
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integrated database retrieval system
