Chitinibacter mangrovi: ABHF33_08120
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Entry
ABHF33_08120 CDS
T11125
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cmav Chitinibacter mangrovi
Brite
KEGG Orthology (KO) [BR:
cmav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cmav03016
]
ABHF33_08120
Enzymes [BR:
cmav01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
ABHF33_08120
Transfer RNA biogenesis [BR:
cmav03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
ABHF33_08120
Prokaryotic type
tRNA splicing ligases
ABHF33_08120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
XBM02217
UniProt:
A0AAU7FDP3
LinkDB
All DBs
Position
1706678..1707898
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AA seq
406 aa
AA seq
DB search
MSKFDILEVKNGKPIKLWTQGVPVEDEAREQLINTAKMPFIFKHLAVMPDVHLGKGSTIG
SVIPTHGAIIPAAVGVDIGCGMMAARTTLTASDLPDNLAGLRSAIEAAVPHGRTNSRAGR
DKGSWDTPPATVDAMWGELHEGFKRITDKYPRLKNTNNHKHLGTLGTGNHFIEVCLDEEN
RVWFMLHSGSRGVGNAIGTHFIELAQADMRSHIANLPHRDLAYFTEGSQHFDDYVEAVGW
AQDFARRNRLVMMQNVIAAARKIITKPFAADVEAVNCHHNYVQKETHFGSEVLVTRKGAV
SAQKGQLGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRTMSRTKAQKLFTVEDQIKATA
HVECRKDADVIDEIPMAYKDIDAVMAAQSDLVEVVHTLRQVVCVKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagtttgatattctggaagttaaaaacggtaaacccatcaaactgtggacccaa
ggcgtccctgttgaagacgaagcgcgcgagcaactgatcaacaccgccaaaatgccgttt
atttttaaacatctggccgtcatgcccgacgtgcatctgggaaagggttcgaccatcggt
agcgtgattcccacgcacggcgcgattattccggcggcggtcggcgtggatattggctgt
ggaatgatggcggcgcgcaccacgctgacagccagcgatttgcctgacaatctggccgga
ttgcgtagcgcgattgaagccgctgtaccgcatggtcgcaccaatagccgcgcgggccgc
gataaaggttcgtgggatacgccacctgcgacagtcgacgcgatgtggggcgaattgcat
gaaggcttcaagcgcattaccgataaatacccgcgcttgaaaaacaccaataaccataag
cacctggggactttgggaacgggaaaccactttatcgaggtgtgtctggatgaagaaaac
cgcgtctggtttatgttgcactcgggctcgcgcggcgtgggaaatgcgattggaacgcac
tttatcgagctggcgcaggccgatatgcgatcacacatcgccaacctgccgcaccgcgat
ctggcttactttaccgaaggtagccaacattttgacgactacgtcgaagccgtgggttgg
gcgcaggatttcgcgcgtcgcaaccgtctggtgatgatgcaaaacgtcatcgctgccgcg
cgcaaaatcatcaccaaaccctttgccgccgacgtggaagcggtgaactgccaccataac
tatgtgcagaaagaaacgcatttcgggagcgaagtactggtgacgcgcaaaggtgcggtg
tcagctcagaaaggccagctgggaattattccgggttcgatgggtgcgaaaagctttatc
gtgcgcgggctaggaaatgaagaatcattctgttcatgcagccacggtgcaggtcgcacg
atgagccgtaccaaggcgcagaaactgtttaccgtcgaagaccagatcaaagccacggca
cacgtcgaatgccgaaaagacgccgacgtgatcgatgaaattccgatggcgtacaaagac
attgacgctgtgatggccgcgcaatccgatctggtcgaagtcgtgcatacgctgcgtcag
gtggtgtgtgtgaaggggtaa
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