Chitinibacter mangrovi: ABHF33_12045
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Entry
ABHF33_12045 CDS
T11125
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cmav Chitinibacter mangrovi
Pathway
cmav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABHF33_12045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmav03019
]
ABHF33_12045
Enzymes [BR:
cmav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ABHF33_12045
Messenger RNA biogenesis [BR:
cmav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABHF33_12045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
HEM4
AAA_22
Cas3-like_C_2
ERCC3_RAD25_C
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
XBL99790
UniProt:
A0AAU7F7I6
LinkDB
All DBs
Position
2554406..2555866
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AA seq
486 aa
AA seq
DB search
MTFATLGLAPEVLKAVAEQGYENPTAIQSQAIPVILTGQDVLGAAQTGTGKTAAFTLPIL
TKIIRHASTSVSPARHPIRVLILAPTRELVDQVYDNVATYSKYTGLRSHVVYGGLDIKAQ
IPALRNGVEVLVATPGRLLDHIGQKNINLSQVEILVLDEADRMLDMGFILDIREIFKLCT
NRKQTLLFSATFAPEIVKLSNEFMNNPVKIEVARQNSANESVKQELHPVETGRKRALLAH
LIRVHDMGQVIVFCRTKIGAEQVSRELKRAGFNCEAIHGDRDQKARTEALNKFKAGETKV
LVATDVAARGLDVTDLPFVVNFELPTNPEDYVHRIGRTGRAGATGIAISLVAPEEDKAYN
GIKALLKRDLPLIPVPGFSPGTIQIIDERESSRERIGSDRGERGASRGAARGERDRFGRR
DSQVRDGHVRDGGMRDGAPAGERMPSRAARDAMDIPAFPSDLPKLPKRGPQIAALFLPKR
SATPQA
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgcaacgcttggccttgcgcctgaagttttaaaggcagttgccgagcagggc
tatgaaaacccgaccgcaatccagtcacaagccattccggtcattctgaccggccaggat
gttttaggtgccgcgcaaaccggtaccggcaaaaccgccgcgttcacgctgccgattctg
accaaaatcattcgccacgccagtaccagtgtttcgcctgcgcgccacccgattcgtgtg
ctgattctcgcgccaacgcgtgagctggttgatcaggtgtacgacaacgtggcaacgtac
agtaaatatactggtctgcgcagccatgtggtctacggcggtctcgatatcaaggcgcaa
attcctgccttgcgcaatggcgtcgaagtattggtcgcaacgccaggccgtttgcttgat
cacattgggcaaaaaaatatcaatttgtcgcaagtcgaaattctggtgctcgatgaagcc
gaccgcatgctggatatgggctttattctcgacatccgcgagatcttcaagctatgtacc
aatcgcaagcaaacgctgctgttctcggcgacgtttgcgccggaaatcgtcaagctcagc
aatgagtttatgaataacccggtcaagatcgaagtggcacgccagaattcggccaatgaa
tcggtcaagcaagagctgcatccggtggaaaccggccgcaagcgcgccttgctggcgcat
ttgatccgtgtgcatgatatgggtcaggtgattgtattttgccgcaccaaaatcggtgcc
gagcaagtatcacgcgagctaaaacgcgccggatttaattgcgaagcgattcatggcgac
cgcgatcagaaagcgcgcaccgaggcgctgaataaattcaaagccggtgagaccaaagta
ttggtcgccaccgatgtggccgcgcggggtctggacgtgaccgatttgccatttgtggtg
aatttcgagctgcccaccaaccccgaagactacgtacaccgcattggccgcactggccgc
gctggcgcgaccggcattgcgatttcactggtcgcacccgaagaagacaaagcctacaac
ggcatcaaagccttgcttaaacgcgacctgcctttgattccggtacccggtttctcgcca
ggcaccatccagattattgatgagcgcgaatccagccgcgagcgtattggttcggatcgc
ggtgagcgcggtgctagccgtggcgcagcgcgaggcgaacgggatcgttttggtcgccgt
gattcgcaggttcgcgatggacatgttcgagatggcggtatgcgtgatggcgcaccagca
ggcgagcgtatgccgtcacgggcagcgcgtgatgcgatggatattccggcatttccaagc
gatctgcccaagctgccgaaacgcgggccacagattgccgcgctatttctgcccaagcgt
tcggcaacgccacaagcctga
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