Chitinibacter mangrovi: ABHF33_13210
Help
Entry
ABHF33_13210 CDS
T11125
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
cmav Chitinibacter mangrovi
Pathway
cmav02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cmav00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ABHF33_13210 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmav03021
]
ABHF33_13210 (rpoD)
Transcription machinery [BR:
cmav03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ABHF33_13210 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SPO22
GTP_EFTU
LPD39
Motif
Other DBs
NCBI-ProteinID:
XBM00019
UniProt:
A0AAU7F7X6
LinkDB
All DBs
Position
2788167..2790101
Genome browser
AA seq
644 aa
AA seq
DB search
MAADKKYDKENPELSGKSEPEKLDPEARKAKFKTLIVLGKERGYLTYAEINDHLPEDMLD
AEQIEGIISMISNMGIQVYDEAPDAEDLLMSDAPAAVADEDAAEEAEAALSSVDAEFGRT
TDPVRMYMREMGTVELLTREGEIEIAKRIEDGLRHMITAISACPTTIGQIIDLVDQGLND
EIRIDDVIDGFIDPNAVEEEEQEPDLPDPDAIADEADDDEDEDEDDGGAAAASANLELLK
TQARECFERVRDLYAKMLAALDKDGTNSPKYQEYQQAIAAEFQTIRFSARQVESLCDVMR
GMVDDIRTHERQIMDLCTRRVGMPREHFIKVFPGRETDLTWVPEEIAAEHSYSGVMYRYK
HAIMEKQQKLNELQDDSRISIKELKEISRQMSTGEAKARRAKREMIEANLRLVISIAKKY
TNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV
HMIETINKMNRIQRQILQETGLEATPEELAERMEMPEDKIRKILKIAKEPISMETPIGDD
DDSHLGDFIEDQNNMAPADAAVYAGLREATKEVLDTLTPREAKVLRMRFGIDMSTDHTLE
EVGKQFDVTRERIRQIEAKALRKLRHPTRSERLKSFIENAASEQ
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagataaaaaatacgacaaagaaaatcctgaattgagcggcaaatcagagcca
gaaaagctggaccctgaggcgcgtaaggccaagttcaaaacgctgattgtgctcggtaaa
gagcgcggctacctcacgtacgccgaaatcaacgaccacctccctgaagacatgttggat
gccgagcagatcgaaggcattatcagcatgatctcgaatatgggcattcaggtctacgac
gaagcgcctgacgctgaagacctgctgatgtcggatgcgccagcagcggtggccgatgaa
gatgccgccgaggaagctgaagcagcgctgtcatcggtggacgccgagttcggccgcaca
accgacccggtgcgtatgtatatgcgcgaaatgggtacggtggagctgttgacacgcgag
ggcgagattgagattgccaagcggatcgaggacggcttgcgtcacatgattaccgctatt
tctgcatgcccgacgaccattggccagattatcgatctggttgatcagggtttgaacgat
gaaatccgcatcgacgatgtgattgatggctttattgacccgaacgccgttgaagaagaa
gagcaagagccggatctacccgatcctgatgccattgctgatgaggctgatgacgacgaa
gacgaagatgaagacgatggtggcgcagcagcagccagcgctaatctggaattgctgaaa
actcaggcgcgtgagtgcttcgagcgcgtgcgtgatttgtacgccaaaatgctggcggcg
ctggataaagacggtaccaatagcccgaaatatcaggaataccagcaagccatcgctgca
gaattccagacgatccgcttctcggcacgccaagttgaatcgctgtgcgatgtgatgcgc
ggcatggtcgacgatatccgtacgcacgagcgtcagatcatggatctgtgtacacgtcgt
gtcggcatgccgcgtgagcactttattaaagtgttcccgggtcgtgaaaccgatctgacg
tgggtgccggaagaaattgctgctgagcatagctactcaggcgtcatgtatcgctacaag
cacgcgatcatggaaaagcagcaaaaactcaacgagctgcaagacgattcgcgcatcagc
atcaaagagttgaaagaaatttcacgccaaatgagtaccggtgaggccaaagcacgccgt
gcgaaacgtgaaatgatcgaggccaacttgcgtttggtgatctcgattgccaagaaatac
accaaccgtggtttgcaattccttgatctgattcaggaaggcaatatcggcttgatgaaa
gcggtggataaatttgaatatcgccgtggttataagttctcgacttacgccacttggtgg
attcgtcaggcgattacccgctcgattgccgaccaagcccggacgatcaggattccggtg
catatgatcgaaacgatcaacaaaatgaaccgtattcaacgtcaaatcctgcaagaaact
ggtttggaagcgacgccggaagaattggctgaacgcatggaaatgccggaagacaaaatc
cgcaagattttgaaaatcgccaaagaaccgatttcgatggaaacaccgattggtgatgac
gacgactcgcacttgggcgactttatcgaggaccagaataatatggccccagctgatgct
gcggtctatgccggtctgcgtgaagccaccaaggaagtactcgatacgctaacgccacgc
gaagccaaagtgctgcgcatgcgcttcggtattgatatgagtacggatcatactttggaa
gaagtgggtaaacagtttgacgtcacgcgcgagcgtatccgtcagatcgaagccaaggcg
ctgcgtaagctgcgtcacccaacgcgttcagaaagattgaaatctttcattgaaaatgcg
gcaagtgagcagtaa
DBGET
integrated database retrieval system
