Chitinibacter mangrovi: ABHF33_16100
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Entry
ABHF33_16100 CDS
T11125
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cmav Chitinibacter mangrovi
Pathway
cmav03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cmav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ABHF33_16100 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cmav03400
]
ABHF33_16100 (mfd)
Enzymes [BR:
cmav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ABHF33_16100 (mfd)
DNA repair and recombination proteins [BR:
cmav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ABHF33_16100 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
XBM02383
UniProt:
A0AAU7FFJ9
LinkDB
All DBs
Position
complement(3416189..3419593)
Genome browser
AA seq
1134 aa
AA seq
DB search
MPHGSGDARLLAEYVGEVKLLVVITASAQEAARIKDEMAFFLPEKNIVQLPDWETLPYDH
FSPHSDLISERLAALWQVRQGAADVLVVPLQTAMGVFAPVEFLTGTTFFLKKGEKLDAEK
LRADMAFAGYNHVTQVYGPGEFSIRGGLIDLFPMGSTLPFRIDLFDDQIETIRTFDVDTQ
RSLYPVPEIRLLPAREFPTDDAGKTKFRQRFREVFEGAPTNARLYKDVSNGIIPAGIEYY
LPLFFDTTATLFDYLPAEGVLALHGDLTGSAEQYWQDIAERHKLNIGDKDRPLLPPRDLF
VAPDLLLGQIKKYRRIELTPLLSSEGGERERSPSARLNQPTTSITQPLPALDVDRRSANP
ISKLTDFAAHYPGRILLVAESLGRRETMAQFFAEYGFKPELVDNWIEAKASKHKIQLIAA
PIFRGFVWQAESLAVITEADLYPAVIQSRGKKQQKRSNTDAMLRDLSELKIGDPVVHEAH
GIGLYMGLTSMDLGDGDTELLLIEYAGGDKLYVPVSQLHVISRYSGGSTENVNVHKLGSG
TWEKAKRKAAEQVRDTAAELLNLYARRAARQGHAFEWSPHDYQAFAAGFGFEETADQAAA
IEAVLVDMRTTQPMDRLVCGDVGFGKTEVALRAAFCAVAGGKQVAVLVPTTLLAEQHYQN
FADRFADWPIKVAELSRFRSGKETAAAIKGLADGSVDIVIGTHKLVQPDVEFAKLGLVII
DEEHRFGVRQKEQLKALRANVDVLTLTATPIPRTLAMSLEGLRDFSVIATAPNKRLAVKT
FVAKFSDGIIREAVLRELKRGGQVFFLHNEVETIENMREKLALLLPEARIGVAHGQMRPT
DLEHVMRDFNQMRFNVLLCTTIIENGIDIPNANTILMNRADKFGLSQLHQMRGRVGRSHH
QAYAYLLVPDVDGISKDAKKRLEAIQMMEELGSGFYLAMHDLEIRGAGEVLGDSQSGEMQ
EIGFALYSQMLKQAVKALKAGKEPDLSQPLGVTTEINLHAPALLPNEYCPDVNERLSLYK
RLASVENNDELNDIHQEMIDRFGLLPDPAKVLLDCHRLRMLAGPLGISKIDAADTAIIIH
FLPKTTVDPMKIISLIQTKKNYKLAGQDKLRVEGNWPESVLRAVRVKELINELH
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atgccgcatggctcgggagatgcgcgcttgctggctgaatatgtgggcgaggtgaaatta
ctggtggtgatcactgccagcgcgcaggaagcggcgcgtattaaagatgaaatggcgttt
ttcctgcccgaaaaaaacatcgtgcagctgcccgactgggaaacgctgccttacgatcat
ttctcgccgcattcggatttgatcagcgagcggctcgcggcgctatggcaggtgcgccaa
ggcgcggccgatgtgctggtggtgccgctgcaaacggcgatgggcgtgtttgcgccggtg
gagtttctgactggcacgacttttttcctgaaaaaaggcgaaaaactcgacgccgaaaaa
ttgcgcgccgatatggcgtttgctggctacaaccatgtcacgcaggtgtatgggccgggc
gaattttcgattcgtggcgggctgatcgatttattcccgatgggcagcacgctgccgttc
cggattgatttattcgacgatcaaatcgaaaccatccgcacttttgacgtcgatacgcag
cgcagcctgtatccggtgccggaaatccgcctgctgcccgcgcgcgaattcccgaccgac
gacgcgggtaaaaccaaattccgccagcgtttccgtgaagtatttgaaggcgcgccgacc
aatgcgcgcctgtataaagacgtgagcaatggcattatccccgccgggatcgagtattac
ctgccgctgtttttcgacaccactgcgacgctattcgattacctgcccgccgagggggta
ttggccctgcacggagatttgacgggctctgcagagcaatactggcaggatattgccgag
cggcacaagctcaatatcggcgataaagatcgcccgctgctgccaccgcgtgatttattt
gttgcgcccgacctgctgcttggtcagatcaaaaaatatcgccgcattgagttgacccct
cttctctcatccgaaggaggagagagagaaagatcgccgtcggcgcggttaaatcagccc
acaaccagcatcacgcagccgctaccagcgctcgatgttgaccgccgcagcgcgaacccg
atttccaagctcaccgattttgccgcgcactatccgggccggattttgctcgtcgccgaa
agcctaggccgccgcgagacgatggcgcaattcttcgccgaatatggctttaaacctgag
ctggtcgataactggattgaggccaaagccagcaagcataaaatccagctgatcgccgcg
ccgatcttccgggggtttgtttggcaggctgaatcactggcggtgattaccgaggccgat
ctgtatccggccgtgattcaatcacgcggcaaaaagcagcaaaaacgcagcaataccgac
gccatgctgcgcgatctatccgagctcaaaatcggcgacccggtcgtgcatgaagcgcac
ggcattggcctgtatatggggctaacgtcgatggatttgggcgatggcgataccgaattg
ctgctgatcgaatacgctggcggcgataaattgtatgtgccggtgagccagctgcacgtg
atttcgcgctactcgggcggctcgactgaaaatgtgaatgtccataagctcggctcaggc
acatgggaaaaggccaaacgcaaagccgccgaacaagtgcgcgataccgccgctgaattg
ctcaatctctacgcccgccgcgctgcgcgtcaaggccatgcctttgaatggagcccacac
gattatcaagcctttgccgcaggctttggctttgaagaaaccgccgatcaggccgccgcg
attgaagcggtgctggtcgatatgcgcaccacgcagccgatggataggctggtgtgtggc
gatgtgggctttggtaaaaccgaagtggcgctgcgcgcggcattctgcgccgtcgcgggc
ggcaagcaggtcgcagtcctagtgccgacgaccttgctggccgagcagcattatcagaat
tttgctgaccgctttgccgattggccaatcaaagtcgccgagttgagccgtttccgttcg
ggcaaagaaaccgctgcagcgatcaaaggcttggccgatggctcggtcgatattgtgatc
ggcacgcataaactcgttcaacccgacgttgaatttgccaagctcggccttgtcatcatc
gacgaagagcatcgctttggcgtgcgccagaaagagcaactcaaggcgctgcgcgccaat
gtggatgtgctgacgctcaccgccacgccgattccgcgtaccttggcgatgagtctggaa
ggcttgcgcgacttctcggtgattgccaccgcgccgaataaacggctggcggttaaaacc
tttgtcgccaagtttagcgatggcattatccgcgaagcggtgctgcgcgaactcaaacgc
ggcgggcaggttttcttcctgcataacgaagtggaaaccattgaaaacatgcgcgaaaaa
ttagcgctactgttacccgaagcccggattggcgttgcgcacggccagatgcgcccgact
gatctggaacacgtgatgcgcgactttaaccagatgcgtttcaatgtgctgctgtgtacg
acgattatcgaaaacggcatcgacattccgaacgccaataccattttgatgaatcgcgcc
gacaaattcggcctgtcgcaattgcaccagatgcgcggccgcgttggtcgtagccatcac
caagcctacgcctacctgctggtgcctgacgttgatggcatttcaaaagacgccaaaaag
cgccttgaagcgattcagatgatggaagagctaggctccggcttctatctggcgatgcac
gatttggaaattcgtggagcaggtgaagtgctgggcgattcgcaatcgggtgaaatgcag
gaaatcggctttgcgctgtattcgcaaatgctcaagcaggcggtcaaggccctgaaagcc
ggtaaagaacctgatttgagccagccgctgggcgtaacgaccgagatcaatctacacgcg
ccagcgctgctaccgaacgaatattgccccgatgtgaacgagcgtttgtcactctacaag
cgcctggccagcgtggaaaacaatgatgagctcaacgacatccatcaggaaatgatcgac
cgctttggcctgttgcccgacccggccaaagtgttgctcgactgccaccgcctgcgcatg
ctggcgggcccgctgggcattagcaaaatcgacgcggccgatactgcgatcattattcat
ttcctgcccaaaactacggttgatccgatgaagatcatttcgctaatccagaccaagaaa
aactataaactggcgggccaggacaagctgcgcgtggaaggcaattggccagagagcgtg
ctgcgtgcggtgcgcgttaaagaactgattaacgagctgcattaa
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