KEGG   Cucurbita maxima (winter squash): 111465125
Entry
111465125         CDS       T05246                                 
Name
(RefSeq) THO complex subunit 3-like isoform X1
  KO
K12880  THO complex subunit 3
Organism
cmax  Cucurbita maxima (winter squash)
Pathway
cmax03013  Nucleocytoplasmic transport
cmax03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cmax00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111465125
  09122 Translation
   03013 Nucleocytoplasmic transport
    111465125
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cmax03019]
    111465125
   03041 Spliceosome [BR:cmax03041]
    111465125
Messenger RNA biogenesis [BR:cmax03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     111465125
Spliceosome [BR:cmax03041]
 Complex C
  Other components
   EJC/TREX
    111465125
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    111465125
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_EML_2 Beta-prop_WDR5 Beta-prop_IFT122_1st ANAPC4_WD40 WD40_CDC20-Fz WD40_Prp19 Beta-prop_WDR3_1st Beta-prop_NOL10_N WD40 Beta-prop_WDR19_1st EIF3I WD40_WDHD1_1st Beta-prop_Nup120_160 Beta-prop_WDR90_POC16_2nd WDR55 Beta-prop_TEP1_2nd WD40_Gbeta Beta-prop_WDR3_2nd Beta-prop_RIG_2nd Beta-prop_CAF1B_HIR1 Tricorn_2nd DSE1_N Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR11_1st PAC11 Beta-prop_TEP1_C Beta-prop_Aladin
Other DBs
NCBI-GeneID: 111465125
NCBI-ProteinID: XP_022965195
UniProt: A0A6J1HL15
LinkDB
Position
Unknown
AA seq 163 aa
MKLASGSVEQTARVSHIEHHEHLCWDHRHSDLIATVSGDKTVRLWDARNGKCSQQDDLSR
ENINITYKPDGTHIAVGNRDDELTILDVRNFKPVHKRKFNYEAAQQRMHLIKINTKNKRE
KMQGRILVKNFILMTSVECPNGTNSSPDSLSGCGEQCGVESKA
NT seq 492 nt   +upstreamnt  +downstreamnt
atgaagcttgcttccggttctgtcgaacaaactgctcgagtttcgcatattgagcatcac
gaacatctatgctgggaccatagacattctgatcttatagcgactgtgtctggagacaag
actgttcgtctatgggatgctcgtaatgggaaatgctcacagcaagatgatctcagtcgg
gaaaatatcaatatcacctacaaacctgatggcacgcacatagctgttgggaatagggat
gatgagcttacaattctggatgttaggaactttaaaccagttcacaagcgcaagttcaat
tatgaggccgcacaacaacgcatgcacttgatcaagataaacacaaagaacaagagagag
aaaatgcaaggaagaatattggttaaaaattttatattgatgacttcagtcgaatgtcca
aatgggacgaacagttcaccagattccttgtcggggtgcggcgaacagtgtggagtggaa
tccaaggcataa

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