Cucurbita maxima (winter squash): 111465413
Help
Entry
111465413 CDS
T05246
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111465413
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cmax03041
]
111465413
Enzymes [BR:
cmax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111465413
Spliceosome [BR:
cmax03041
]
Complex C
Other components
Step II factors
111465413
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
S1
DEAD
AAA_22
AAA_19
nSTAND3
ABC_tran
AAA_30
AAA_16
TsaE
Sigma54_activ_2
T2SSE
PhoH
Motif
Other DBs
NCBI-GeneID:
111465413
NCBI-ProteinID:
XP_022965541
UniProt:
A0A6J1HLZ3
LinkDB
All DBs
Position
Unknown
AA seq
1230 aa
AA seq
DB search
MVASTANGDDGLKKLEYLSLVSKVCSELETHLGFGDKVLAEFITEMGRSCETVDEFDVKL
KENGAEMPDYFVRSLLRIIHLILPPQKNNEKELKKDKESDGKKSKFRALVIDDDRERAKE
LEKEIELELRQKRGDRDEEDDRYKGRAGDRGKDRERDRDRDRDRGRDRDRDRDRDRDRDR
DRDRDSYRDRDRDRDRRRDRYERDERHGGRDRDDDGDDDHRRSGRQRDRNRKNGYEEDER
YGGDAEAGNGNWRGDRDKHTQNGRHHPVDQEPELYKVYKGRVSRVMDTGCFVQLSDFRGK
EGLVHVSQIATRRISNAKDIVKRDQEVYVKVILFSGQKLSLSMRDVDQHSGKDLLPLTKK
KDADDGPRMNPSDSKDDGPVVRTGLSGIKIVEDDVTVPSRRPLKRMSSPERWEAKQLMAS
GVLSVSEYPSYDDEGDGLLYLEEGAAEEELEIELNEDEPEFLQGQSRYSIDMSPVKIFKN
PEGSLSRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPETGERHLAQELRG
VGLSAYDMPEWKKDAYGKDISFGQKSKLSIQEQRQSLPIYKLKKELIQAVHDNQVLVVIG
ETGSGKTTQVTQYLAEAGYTTSGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRF
EDCTGPDTVIKYMTDGMLLREILIDDNLSQYSVIMLDEAHERTIFTDVLFGLLKKLVKRR
PDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPETDYLDAALITVLQIH
LTEPEGDVLLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFEPA
PPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA
GRAGRTGPGKCYRLYTESAYRNEMSPTSIPEIQRINLGHTTLTMKAMGINDLLSFDFMDP
PSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTI
IAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQ
SRSLRRAQDVRKQLLSIMDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLV
ENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRYFKVADPTK
MSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atggttgcttccacggctaacggcgacgatggattgaagaaattggagtacttatccctt
gtctccaaggtatgttctgagcttgaaactcatttaggtttcggagataaagttcttgct
gagttcataacggagatgggacggagctgtgagacggtggatgagttcgatgtcaaattg
aaagagaatggcgcggaaatgcctgattactttgttcgctcgcttctgaggatcattcac
cttattcttcctccgcagaagaacaacgaaaaggagttgaagaaggataaggaatcagat
gggaagaagagcaagtttcgggccttggtgatcgatgatgatcgggagagagcgaaggag
ctggagaaggaaattgagttggagcttcgccagaagcgtggggacagagatgaagaagat
gatcgatacaaggggagggccggggacagaggaaaagacagagagagggacagagacaga
gacagagacagaggtagggatagggatagagatagagatagggatagggatagggatagg
gatagggatagggatagttaccgggatcgggatcgggatagagataggcgcagggataga
tatgaaagggatgagagacatggtgggagggatcgcgacgatgatggtgatgatgatcac
cggagaagcggaaggcaaagggatcggaataggaaaaatggatatgaagaagatgagcgt
tatgggggtgatgcagaagctggtaatggcaattggagaggtgatagggacaagcataca
caaaatgggcgacaccaccctgtcgaccaagaacctgaattgtacaaggtctacaagggt
agagtttccagagtgatggacacgggttgctttgtccaactgagcgattttagaggtaag
gagggtctggttcatgtttctcagattgccacccgaaggattagcaatgccaaggatatt
gtaaagcgtgatcaagaggtttatgtcaaggtcattttattttcagggcaaaagttgagc
ctttctatgagggatgtcgatcagcattctggcaaggatttacttccgttaacgaagaaa
aaagatgccgacgatggtcctagaatgaatccttcagattcaaaggatgatgggccggtg
gttaggactggcctttcggggattaaaattgtggaagatgatgttactgtcccttcacgc
agacctttgaagcgcatgagctcacctgagagatgggaagccaagcagctgatggcttct
ggggttttaagtgtaagcgagtatccttcttatgatgacgagggagacgggttattatac
ctagaagagggtgctgctgaagaagagcttgagattgagttgaatgaggacgagcctgaa
tttctgcaaggccagagcagatactcaattgatatgtcgccagttaagatctttaaaaat
ccggaagggtcactgagtcgagcagctgcacttcaatctgcactcattaaggagcgtaga
gaagttcgtgagcagcagcagaggaccatgctcgattcaattccaaaggatcttaatcga
ccttgggaagaccctatgccagagactggtgagagacatcttgcacaggagctcaggggt
gttggcttgtcggcctatgatatgccagagtggaagaaggatgcctatggaaaagatatc
agttttgggcagaagtcaaagctctctatccaggaacagaggcagagcttacccatttac
aagctgaagaaagaacttattcaggctgttcatgataatcaggttcttgttgtcattggc
gagactggttcaggtaagacaacacaagtaactcagtatcttgctgaagctgggtacaca
acatctggtaaaattggatgtactcaaccacgtagggtggctgcaatgtccgtcgcaaag
agggttgctgaagagtttggatgtcgcttaggagaggaagttggatatgctattcgtttc
gaggattgtacaggacctgataccgtgatcaagtatatgactgatggtatgcttcttagg
gagattttgattgatgataatttgtctcagtactccgtaattatgcttgatgaagctcac
gagagaacgatcttcactgatgttctttttgggttgctgaagaaacttgtgaaaaggaga
cccgatcttcgtctaatcgtcacatccgctactttagatgctgaaaaattttcaggatat
ttcttcaattgtaatatttttacaattcctgggagaactttccctgtggagatcctctat
accaagcagccagaaactgattatcttgatgctgccttaatcactgtcttgcagatccac
ttgacagaacctgaaggagacgtacttctttttttgactggtcaggaggagattgatttt
gcatgtcagtcgctctacgagagaatgaaaggacttggtaaaaacgttcccgagttaatt
attctaccagtctacagtgccttacccagtgaaatgcagtccaggatatttgaaccggct
cctccgggtaaaaggaaagttgtagtggctacgaacattgctgaggcctcgttgacaata
gatggaattttttatgttattgatcctggattcgctaaacagaatgtatataacccaaag
caagggcttgattctcttgtcattacaccaatctcacaagcatcagccaaacagcgtgca
ggtcgtgcagggcgaacaggacctggaaaatgctaccgcctctatactgagagtgcttat
cgcaatgagatgtctcctacatcaataccagaaatccagaggattaatcttggtcatact
actcttacaatgaaagcaatggggataaatgatcttctgtcatttgattttatggatcca
ccttcaccccaagctctaatttcagcaatggaacaactttacagtctaggagcacttgac
gaagaaggacttctgactaagttgggtagaaaaatggccgagtttccgttagatccacct
ttgtctaaaatgctgctagctagtgtggatcttggatgcagtgatgagatcttgacaata
attgctatgattcagactggaaatatcttttacaggccaagggaaaaacaagcccaggct
gatcagaaaagggccaaatttttccagccagagggagatcatctgacgttgcttgcagtt
tatgaggcatggaaagccaaaaacttttcaggcccctggtgttttgagaactttgttcaa
tctcggtccttgaggagagcgcaggatgtgaggaaacaacttctttcgattatggacaag
tataaattggacgtagtgagtgcaggcaagaatttcactcagataaggaaggccatcaca
gccggattctttttccatgcagccagaaaggatcctcaagagggttatcggactctagtc
gagaaccaaccagtttatatccatccgagcagtgcattattccaaagacagcccgactgg
gtcatataccacgagctggtcatgacgacaaaagaatacatgcgcgaagtaacagtcata
gatcccaaatggctcgttgaattagctccaagatacttcaaagttgcagatccaacaaag
atgagcaagcgaaagaggcaagagcgtatcgaaccgctctacgacagatatcacgaacct
aactcttggagattgagtaagagacgagcttaa
DBGET
integrated database retrieval system
