KEGG   Cucurbita maxima (winter squash): 111466963
Entry
111466963         CDS       T05246                                 
Name
(RefSeq) sm-like protein LSM2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
cmax  Cucurbita maxima (winter squash)
Pathway
cmax03018  RNA degradation
cmax03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cmax00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111466963
  09123 Folding, sorting and degradation
   03018 RNA degradation
    111466963
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cmax03019]
    111466963
   03041 Spliceosome [BR:cmax03041]
    111466963
Messenger RNA biogenesis [BR:cmax03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     111466963
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     111466963
Spliceosome [BR:cmax03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    111466963
 Complex C
  U2 snRNP components
    111466963
SSDB
Motif
Pfam: LSM SM-ATX DUF150_C DUF1256
Other DBs
NCBI-GeneID: 111466963
NCBI-ProteinID: XP_022967419
UniProt: A0A6J1HWN2
LinkDB
Position
Unknown
AA seq 93 aa
MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
NT seq 282 nt   +upstreamnt  +downstreamnt
atgttgtttttctcgtacttcaaggatttggtgggcagagaggtgacagtcgagttgaaa
aatgacctatcaattagaggaactctgcactccgttgatcaatatctcaacatcaaactt
gaaaacaccagggttgttgatcaagacaaataccctcacatgctttctgtgagaaactgt
tttatcaggggatcggtggtgagatatgttcaacttccaccagatggcgttgatatcgag
ctgttgcacgatgccacgagacgcgaggctcggggtggctaa

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