Cucurbita maxima (winter squash): 111467017
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Entry
111467017 CDS
T05246
Name
(RefSeq) exosome complex component RRP4 homolog isoform X1
KO
K03679
exosome complex component RRP4
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111467017
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111467017
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
111467017
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
111467017
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
111467017
NCBI-ProteinID:
XP_022967543
UniProt:
A0A6J1HVC7
LinkDB
All DBs
Position
Unknown
AA seq
327 aa
AA seq
DB search
MRELQISLNQTQRIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN
GEVVATICGVVERINKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM
LSSMNLPDGIQRRQTADDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKVERGQ
LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIRIGERVDPTEDMMIEDQVNKSEQKGS
KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSLSLNINV
HEMLGSEFCVLTAEKEAERRTSSKKRG
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atgagagaattacagatttccttgaatcaaacccagaggattcggcttcaaagagcccta
gaactgctcgagtctatctcttcgaaggccaattccgatgcttctgttatagttgctgat
actattcctctgaattacgacgatggtgtcctcaagggacatgggacccttgacttaaat
ggagaagtagttgccactatttgtggagtggttgagcgaatcaataagcttatctatgta
cgtgccttacgtgctagatataaaccggaggttggtgatatcatagtggggcgtgttaca
gaggttgccccaaaacgttggagattgaatataaactatagccaagatgctgtcttgatg
ctttcttcaatgaacttgcctgatggtattcagaggaggcaaactgcagatgatgaactc
aacatgcggagcattttcgaagaaaatgatgttatttgtgcagaagtgcgtggttttcag
catgatggcctacaccttcaagcgagaagccagaagtacgggaaggttgaacgaggtcag
ctgctcacagtatcaccgtatctagtcaagagacgcaaacaacacttccatcatttggag
cagtatggtattgacttaatattcggatgcaatggatttatccggattggggagcgtgtt
gatcccacagaggatatgatgatagaagatcaagttaataaatctgaacaaaagggttca
aaatttgaaggaacttttggtaaccaagtgcaagaaagagtatatactccactagagaca
cgtcagaatatatgcagaactgcaaatgctattcgagtattgtccaacttaggtttcata
atgacagtagaagtcataatggagacagttagtctaagtctttctctgaacatcaatgtg
catgaaatgcttggttcggagttctgtgtcctcactgcagaaaaagaggctgaacggcgg
acttcgagtaagaagaggggatga
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integrated database retrieval system
