Cucurbita maxima (winter squash): 111467020
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Entry
111467020 CDS
T05246
Name
(RefSeq) protein CHROMATIN REMODELING 8-like isoform X1
KO
K10841
DNA excision repair protein ERCC-6
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
111467020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cmax03036
]
111467020
03400 DNA repair and recombination proteins [BR:
cmax03400
]
111467020
Chromosome and associated proteins [BR:
cmax03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
111467020
DNA repair and recombination proteins [BR:
cmax03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
111467020
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HDA2-3
ResIII
Motif
Other DBs
NCBI-GeneID:
111467020
NCBI-ProteinID:
XP_022967550
UniProt:
A0A6J1HR51
LinkDB
All DBs
Position
Unknown
AA seq
1223 aa
AA seq
DB search
MEEEEDRIFLNSLGVTSANPEDIERDLIEEAKKNSENGADVGGIAEENACEKLDTTDLPS
ASHVLLHQKLRAVEYEIDAVASTVESGKKLERNEQHSHVGADPQEYGREEDGVSASADGL
QHALAVDRLRSLKKTQQQLKKELSHLNDKHAETLLEIVKDRSKPKRKSKEVKKSGKNGEK
RLKVVSFDEDNDFDAALDAATVGFVETERDELVRKGILTPFHKLKGFERRLQNPGQSSLQ
NAGQSRPEVKGEEEENDDFASDSVAKAVQSMSVAAQARPTTKLLDPEDLPKLDPPTRPFY
RLKKPAKVPLSAEDKATKKIKCKKTRRPLPDKKYRKQIAMEERDEEAAENMSDGLHTSGS
ERENSGDLEDDVHESSSVTLEGGLKIPQSIFDQLFDYQKVGVQWLWELHCQRAGGIIGDE
MGLGKTVQVLAFLGALHFSNIYKPSIIVCPVTLVRQWKREARKWCPDLLVEILHDSAHDP
TYRKMREKSYESDESEDSEESDYGKNSQSKGTKKWDSLINRVLRSESGMLITTYEQLRLL
GGKLLDIEWGYAVLDEGHRIRNPNAEVTLVCKQLQTVHRIIMTGSPIQNKLTELWSLFDF
VFPGKLGVLPVFEAEFAVPISVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVN
AHLPKKTEHVLFCSLTSEQRSVYRAFLASSEVESILDGNRNSLSGIDVMRKICNHPDLLE
REHSFQNPDYGNPERSGKMKVVEQVLKVWKEQGHRVLLFAQTQQMLDILERFMVGGGYTY
RRMDGGTPVKQRMALIDEFNNSCEVFVFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDM
QARERAWRIGQQRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARDMK
DLFTLNEDAVDGSTETSNIFSELTDSVNVVGVQKNEKDEQKIGRGSVSYTDSADEKPCKS
ETETSGRDDSVEMGQGRGADEDENILKSLFDAHGIHSAVNHDIIVNADDGEKIRLEEQAS
QVARRAAEALRQSRILRSNESVSVPTWTGKAGTAGAPSSVRRKFGSTVNSLVNNKSKSPD
EASRNGASHLNGLAAGTSSGKALSSAELLAKIRGNQERALSAGLEHHQPAPSSSSNNVRG
AGVGSSRSSKNLSGVQPEVLIRQICTFIQQRGGSADSASIVQHFKQRIPSNDLPLFKNLL
KEIAILEKSPSGSLWVLKAEYKQ
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagaggaggatcggatttttctgaacagcttgggtgtgacgtctgctaatccg
gaggatatagagcgggacttgatagaggaggcaaaaaagaatagtgagaatggtgctgat
gttggaggaattgcggaagagaacgcctgtgagaagttagataccactgatttaccttct
gccagtcatgtgctgctccatcagaagcttagggctgttgaatacgagatcgatgctgtt
gcatcgacagtggaatcagggaagaaacttgaaagaaatgagcaacattctcatgttggt
gctgaccctcaggagtatgggcgtgaagaggacggtgtttcagcttctgcagatggcctt
cagcatgcactggctgttgacaggctaagaagcttgaagaaaacccaacagcagttgaag
aaagaactttcccatttgaacgacaagcatgccgagacattattggagatagtcaaggac
agatcaaaacctaaaagaaagtctaaagaggttaagaaatcaggaaaaaatggagaaaag
aggttgaaagttgtgtcatttgacgaagataacgattttgatgcagctttggatgcagcc
actgtgggctttgttgaaacagaaagagatgaattggtgcggaagggaattttaacacca
tttcacaagctaaagggctttgagcgccgtcttcagaaccctgggcaatcaagtcttcag
aacgccgggcaatcaaggcctgaagtaaagggggaagaagaggaaaatgatgactttgct
tctgacagtgttgctaaagccgtccagtcaatgtcagtggctgcacaagctcgaccgacc
actaaattgcttgatccggaagatttgccgaagcttgatccgccaactcgtcctttttac
aggttaaaaaaacctgcaaaggttcccctctctgcagaagacaaagctacaaaaaaaata
aaatgcaaaaagactagacggcctttgccagacaaaaaatacagaaaacaaattgccatg
gaggaaagagacgaggaagctgctgagaatatgtcagatggtttacatacatcaggttct
gaaagagaaaattcaggagatttagaagatgatgttcacgaatcttcttctgtaacgctt
gaaggcgggctgaaaattcctcagagcatatttgatcagctctttgattaccaaaaagtt
ggggtccagtggttatgggaattgcactgccaaagggctggtggaattattggagatgag
atgggccttgggaaaacggtccaggtcttggcctttttaggtgcattacatttcagtaac
atttataaaccaagcatcatcgtctgccctgttacactagttagacagtggaagagggag
gcacggaaatggtgcccggaccttttggtggaaatccttcatgattctgctcatgatccc
acatacaggaagatgcgagagaaatcttatgaaagtgatgaaagtgaagattcagaggaa
agtgattatgggaaaaactcacagtccaaaggcacaaaaaaatgggattccttgataaac
cgtgttttgaggtcagaatccggtatgctcattaccacttatgaacaactacgactgtta
ggtgggaagttgcttgacattgaatgggggtatgcagtcctggatgaaggtcatcgtatt
cgaaatccaaatgctgaagtcactttagtttgcaagcagctgcagacagtacatcgcata
atcatgacgggttctccaattcagaacaaattgactgagttgtggtccttgtttgatttt
gttttccctgggaagttgggagtgttgcctgtatttgaagcagagtttgcagttcctata
tctgttggtggctatgctaatgcctctccattgcaagtatcaactgcatataggtgcgct
gtcgttcttcgtgacttaattatgccctatcttcttagaaggatgaaagctgatgtgaat
gcacatttgccaaagaaaaccgaacacgttctcttctgcagtctaacttctgagcaacgt
tctgtctatagagcattccttgcaagctctgaagtggaaagtattttggatgggaataga
aattctctttctggaattgatgtaatgcgtaaaatttgcaaccacccagatctactcgag
agagaacactctttccaaaatcccgactatgggaatcctgaacgtagtggaaaaatgaag
gtagttgagcaagtgctgaaggtctggaaggaacaaggtcatcgtgttcttcttttcgcg
cagacccaacagatgcttgacattttagagagatttatggttggaggtggttatacttac
aggaggatggatggtggtactcctgtcaaacagagaatggccttgattgatgaattcaac
aattcatgtgaggtgtttgtttttattttaacaaccaaggttggtggtctaggaaccaac
ttaactggagcagatagggttataatcttcgaccctgattggaatccatcaaccgacatg
caggcaagggagcgtgcttggcgtattggtcaacagcgagatgtgacagtgtatagattg
atcactcgtggaactatagaggagaaagtgtaccatcgacagatatataaacattttctc
actaataagatcttaaaaaacccacagcagagaaggttctttaaggctagagacatgaaa
gatctctttacactgaacgaggatgcggtggatggatcgacagaaacgtcaaatattttc
agtgagttgaccgatagtgtaaatgttgttggcgttcagaaaaatgagaaggatgagcaa
aaaattggccgtggctctgtatcgtatacagattctgctgatgaaaaaccatgcaaatca
gagactgaaacttctggaagagatgattctgtagagatgggtcagggtcgtggagcagac
gaagacgaaaatatcttgaagagcctctttgatgcgcatggtattcatagtgccgttaat
catgatatcattgttaacgctgatgatggggagaagatacgactagaggagcaagcttct
caagttgcacgtagagcagccgaggcattgcgccagtcgagaattctgcgaagtaatgag
agtgtctcagttccaacatggactggaaaagctggaaccgctggtgcaccatcgtctgtg
cgtcgaaagtttggttcaaccgttaactctctggtaaacaacaaatccaaatctccagat
gaagcatcaagaaatggagctagccatttaaatggccttgcagctggaacatcttccgga
aaggccttatcttcagctgagcttctggctaaaatcagaggaaaccaagaaagagcatta
agcgccgggcttgaacatcatcaaccagctccttcaagtagttcaaacaacgtacgaggt
gccggtgtcggttcttctcgatcatcgaagaacctttctggagtacaacccgaagtattg
attcggcagatatgtacgtttattcaacaaagaggcggatccgctgattcagccagtatt
gtacagcattttaagcagaggataccctcaaatgatttgcccttgtttaagaatctgctg
aaagagatagcaatattagagaaaagccccagtggatcactctgggttctgaaggcagag
tataaacagtaa
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