Cucurbita maxima (winter squash): 111467097
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Entry
111467097 CDS
T05246
Name
(RefSeq) THO complex subunit 6
KO
K13175
THO complex subunit 6
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03013
Nucleocytoplasmic transport
cmax03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111467097
09122 Translation
03013 Nucleocytoplasmic transport
111467097
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111467097
03041 Spliceosome [BR:
cmax03041
]
111467097
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
111467097
Spliceosome [BR:
cmax03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
111467097
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
WD40_Prp19
Beta-prop_IFT122_1st
Beta-prop_THOC3
EIF3I
WD40_WDHD1_1st
Beta-prop_WDR41
Beta-prop_WDR3_2nd
WDR55
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
Beta-prop_CAF1B_HIR1
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_NOL10_N
Beta-prop_EML
WD40_MABP1-WDR62_2nd
DSE1_N
Beta-prop_Nup120_160
Beta-prop_ACSF4
Beta-prop_WDR75_1st
Motif
Other DBs
NCBI-GeneID:
111467097
NCBI-ProteinID:
XP_022967656
UniProt:
A0A6J1HSS1
LinkDB
All DBs
Position
Unknown
AA seq
370 aa
AA seq
DB search
MLGDATNWDEDAYRESLYKEREVQTRTVFRTAWAPSLSGCPESIVVASSDGSIASYSIAS
CISKLHSGYGNTKSLLAAEPHCFLQGHDGPAYDVKFFDAGDNTLLLSCGDDGHIRGWRWN
ECTDIEVPIYLQGSHIEPVMDLMNLQYKGPWGALSPIPENNAIATNTQSGSIFSAAGDSC
AYCWDLESGKIKMVFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKTGKCIQLIDPA
KDNKKQKGNFSCVRCIALDASESWLACADGRSFSVWNLPASDFISRTLTRSSMQDMVFCD
NQILGVGAEPLLTRFDIHGSILSEIQCAPQSAFSVAVHPSGVAAVGGYGGLVDVISQFGS
HLCTFFCQYR
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atgttgggggacgcgacgaattgggacgaggatgcttaccgagagagtctatacaaagag
agagaggtacaaactcggacggtgttcagaactgcgtgggcgccgtctttaagtggttgc
cctgagtccatcgtggtcgcctccagtgatggatccattgcctcttattctatcgcttcc
tgcatctctaagctgcattctggttatggcaatactaaaagtttgctggcagcagagcct
cattgctttctgcaagggcacgatggacctgcatatgatgttaaattttttgatgctggc
gacaatactttattactgagctgcggggatgatggtcacattcgaggatggaggtggaac
gaatgcacggatatagaggtgcctatatatttgcaaggtagtcatattgagcctgtaatg
gacctgatgaatcttcaatacaaaggtccctggggtgctctttctccaatccctgaaaat
aatgcaattgctaccaatacgcagagtggatccattttttctgctgctggagattcttgt
gcgtattgttgggatttggagagcggtaaaattaagatggtgtttaaagggcactctgac
tacttgcactgtatagttgcccgaaacactgtcaatcaaatcataactggttcagaagat
ggtacagcacgaatatgggattgcaagactggaaagtgcattcaactaatcgacccagcg
aaggataataagaagcagaaagggaacttttcttgtgttagatgcattgctcttgatgca
agtgaaagctggttggcctgtgctgatggtcggagtttttcagtttggaaccttccggct
tcagatttcatttcaagaactttgacccgttcttcaatgcaggatatggttttttgtgat
aatcaaatactaggcgttggagcagaaccattactaactcgattcgacatacatggatca
attctctcagaaatacaatgtgcccctcaatccgctttttctgtcgctgtgcatccatct
ggcgtcgcagcagtcggaggctatggtggtctcgtggacgttatctcacagtttggaagc
catttatgtacattcttctgtcaatacagatga
DBGET
integrated database retrieval system