Cucurbita maxima (winter squash): 111470290
Help
Entry
111470290 CDS
T05246
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03020
RNA polymerase
cmax03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
111470290
09124 Replication and repair
03420 Nucleotide excision repair
111470290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmax03021
]
111470290
03400 DNA repair and recombination proteins [BR:
cmax03400
]
111470290
Enzymes [BR:
cmax01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
111470290
Transcription machinery [BR:
cmax03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
111470290
DNA repair and recombination proteins [BR:
cmax03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
111470290
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
Motif
Other DBs
NCBI-GeneID:
111470290
NCBI-ProteinID:
XP_022971615
UniProt:
A0A6J1I682
LinkDB
All DBs
Position
Unknown
AA seq
1854 aa
AA seq
DB search
MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK
FKQAMRIRNPKNRLKKILDACKNKTKCEGGDEIDVQGQDSDQPVKRGRGGCGAQQPKISI
DGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDDDCKLLGLNPKYAR
PDSMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS
EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQIN
LSRTSAWHSESESGFITPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL
EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK
LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ
LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP
GEDLLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEI
APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP
EMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTP
YHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN
PQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYN
TGASPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTSQTTDKDDRSRKDDRSNR
NT seq
5565 nt
NT seq
+upstream
nt +downstream
nt
atggatttgcggttcccttactccccggctgaggttgccaaagtccgaatggttcagttt
ggcatacttagcccagatgagattaggcaaatgtccgtggtgcaaattgagcatggtgaa
actacagagaggggtaagccaaaagtaggtggtttgagtgacccgcggcttggtacaatt
gacagaaaaatgaagtgtgaaacttgcactgcgaacatggctgagtgccctgggcacttt
gggcacctcgagcttgccaagccaatgtttcatattggatttatgaagactgtgctcact
atcatgcgttctgtttgcttcaattgctcaaagattctagttgacgaggaggacccaaaa
tttaaacaagcgatgcggataaggaatcccaagaacaggcttaaaaagattttggatgcc
tgcaagaacaaaaccaagtgtgaaggtggagatgaaattgatgttcaaggccaagattca
gatcaaccggtgaaaaggggtcggggtggctgtggtgctcagcagcctaagatctcaatt
gatggtatgaaaatggttgctgagtacaaggctcagaggaagaaaaatgatgaccaggag
cagctgcctgaacctgtggaaagaaaacagacacttagtgccgaaagggttcttggtgtt
ctgaaaagaataagcgacgatgattgcaaactcttgggcctaaatcccaagtatgctcga
cctgactcgatgattctgcaagtccttccaattcctccacctcctgtgagaccatcggtt
atgatggacacctcatctagaagtgaggacgatctaactcatcagttggctatgattata
aggcacaatgaaaacctcaggaggcaagaaagaaatggttctcctgctcatatcatttca
gagtttgcacaactactgcagtttcatatagccacgtattttgataatgaattacctgga
ctacccagggccacacaacgatctgggaggcccattaaatctatttgtagtagactcaag
gcaaaggaaggccggattagaggtaacttgatgggaaaacgtgtagatttttcagcacgt
acagttataacacctgatccaacaattaatattgatgaactgggagtgccgtggagcatt
gctttgaaccttacatatccggagaccgtgacaccatataatatagagagattaaaggaa
cttgttgaatatggtccccatcctccacctggtaaaactggtgccaagtacattatacga
gatgatgggcagaggcttgatcttcgatatcttaagaaaagtagtgatcatcatttggag
cttgggtacaaggtggagcgtcatttgaacgatggtgactttgtactttttaatcgtcag
cctagtctccataaaatgtctatcatgggacacagaatcaagattatgccctactcaact
ttccgcctaaatttatctgtcacgtcaccttacaatgctgattttgatggtgatgaaatg
aatatgcatgttcctcagtcatttgagacaagggcagaagtattggagctcatgatggtt
cccaaatgcattgtgtcacctcagtcaaaccgtcctgtcatgggtatagtgcaagatact
ctgttaggatgccgtaaaattacaaaaagggacacctttataacaaaggatgttttcatg
aatatcttgatgtggtgggaagattttgacgggaaagttcctgcccctgcaattttaaag
ccacaacctctttggactggaaaacaagtttttaatcttatcataccaaagcagattaat
ctctcgagaacttctgcttggcattcggagtctgaatctggattcattactccgggggat
actttcgttaggattgagaagggggaactgctttctggaactctttgcaagaagactctc
ggaacttcaactggaagtcttatacatgttatttgggaggaggttggtcctgatgcagct
agaaaatttcttggtcatacacagtggcttgtcaattactggcttttgcagaatgctttt
agcattgggattggagatacaattgctgatgcagcaaccatggagaaaattaatgaaact
atttctgcagctaaaaatgaagtgaaaaatctcattaagaaagcccaggagcgtagttta
gagcctgaacctggacggacgatgatggattcatttgaaaacaaagtgaaccaggtcctg
aataaggctcgtgatgatgctggtagtagcgcgcaaaaaagtttgtcagagagtaacaat
ctgaaagctatggttactgcaggatccaagggaagttttatcaatatctcccagatgact
gcttgtgtggggcagcaaaatgttgaagggaagcgaataccatttggttttattgatcga
actttgccccatttcactaaagatgattatgggcctgaaagtcgtggctttgttgaaaac
tcatatcttcgaggattgaccccacaggagttcttttttcatgctatgggtggtagggaa
ggtcttattgatactgcagtcaagacctctgaaacagggtacattcagaggaggctggtg
aaggctatggaggatatcatggttaaatatgatggaactgttcgaaactcactgggtgac
gtaattcagtttctttatggtgaagatggcatggattctgtttggatagaatctcagaaa
ctagattctttgaaaatgaagaaaaaggaatttgagaggatcttcaggtatgagtttgaa
gatgagaactggaagccaaactacatgttgccagagcatgttgaagatttaaaaactatc
cgtgaattccgcaacgtatttgaggctgaagtccaaaagcttgaagcagacaggtaccaa
ttgggaacagaaattgcaaccacaggtgaaaactcatggccaatgccagttaacctcaaa
aggcttattcagaatgcacaaaagactttcaaaatcgactttcgaagggcctctgatatg
catcctatggaaattgttgaagctatcgacaaacttcaagaaaggctgaaggttgttcct
ggggaagatcttcttagtgtggaggctcagaagaacgccacccttttcttcaatatattg
ctgcgaagcacttttgctagcaaaagggttttggatgaatacaggcttacacgcgaagcg
tttgagtgggttattggagaaatagaatcacgctttcttcagtcactagttgcacctggt
gaaatgattggctgtgttgctgcacaatccattggagagccagcgactcagatgacactt
aataccttccattatgctggtgttagtgccaagaacgtcacccttggtgttcccaggttg
agggaaatcattaatgtagccaagagaatcaaaacaccatctctttcagtctatctaaaa
cccgaagctaataaaactaaggagagagccaagactgttcaatgtgctttggaatatact
actcttaggagtgtcacacaagctacggaagtatggtatgatcctgacccaatgagcaca
attattgaagaggatatggattttgtgaaatcgtactatgagatgccagatgaagaaatt
gcgcctgagaaaatctccccatggttgctccgtatagagttgaatcgtgaaatgatggtg
gataagaaacttagcatggcgaatattgccgagaagatcaaccttgaatttgatgatgat
ttgacttgcatatttaatgatgataatgctgagaagcttatacttcgtatccgtatcatg
aacgatgaagccccaaagggtgagttgaatgatgaatcagctgaagacgacgtgttcttg
aagaaaattgagagcaacatgctaactgaaatggctcttcggggaataccagatatcaac
aaggttttcatcaagtgtggtaaagtgaacaagtttgatgagaatgaagggtttaagccg
gagatggagtggatgttggatacagaaggtgtcaatcttttagcagttatttgtcatgaa
gatgttgatgcgaggaggaccacaagcaaccatttaattgaagttattgaagttcttggg
attgaagcagttcgacgttccctcctagatgaattgcgtgttgttatctcttttgatgga
tcttatgttaattaccggcatcttgccatcctttgtgacaccatgacttatcgtggccac
ctgatggctattactcgtcatggtatcaaccgaaatgatactggaccgatgatgagatgc
tcatttgaagaaactgtggatattttacttgatgctgcagtatatgctgaaactgatcac
ttgaggggtgttactgaaaatataatgttgggtcaactggcacccataggaacaggaggt
tgtgctctgtatctcaatgatgagatgttgaagaatgctattgagctccagctgcctagt
tacattgatggtctggagtttggcatgacaccttcccgttccccaatctcaggaactcct
tatcatgaagggatgatgtctccgagttatttgttgagcccgaatctccgcctctcacct
attagtgatgctcaattttcaccctatgttggaggaatggctttctcgcctacttcgtct
ccgggatatagcccatcatctccgggctacagtccatcatcccctggctatagtcctacc
tcccctggttatagccccacttcccctggatatagccctacctctcctggctacagtcca
acatctccaacctacagtcctagttcgcctggttacagcccaactagtcctgcgtattct
cctacgagtccatcttattcacccacctctcccagttacagccccacctctccaagttac
agtcccacgtctccaagttacagccccacatctcctagttacagcccaacatctccaagt
tacagccccacttcgccggcttacagtcccacttctcctgcttatagtcccacttcacct
gcatatagcccaacttcaccctcctacagcccaacttcaccctcctacagcccaacttcg
ccttcctatagccccacatcaccctcctacagcccaacatccccgtcctacagccctaca
tcaccttcctacagccccacctctccagcatatagccccacctcccctggctatagcccc
acgtcaccgagctacagtcccacttcgccgagctatagtccgacatcaccaagttataat
cctcaatcagctaaatacagcccatcacaggcctactcacccagtagtccacggttgtct
ccatcaagtccctatagcccaacctctccgaactacagtccaacatcaccatcatattca
cctacgtctcctgcatattctccatcaagcccaacctacagtcctagcagtccatataac
acaggagccagcccagactacagccccagttctccacaatatagtccaagtgcaggatac
tcacctactgctcctggatattctccgtcatctactagtcagtacacctcacaaacaact
gacaaggatgataggagtagaaaggacgataggagcaatcgatga
DBGET
integrated database retrieval system
