Cucurbita maxima (winter squash): 111470829
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Entry
111470829 CDS
T05246
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
cmax
Cucurbita maxima (winter squash)
Pathway
cmax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111470829
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmax03019
]
111470829
Messenger RNA biogenesis [BR:
cmax03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111470829
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111470829
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
DUF3720
DUF4407
Motif
Other DBs
NCBI-GeneID:
111470829
NCBI-ProteinID:
XP_022972237
UniProt:
A0A6J1I9B4
LinkDB
All DBs
Position
Unknown
AA seq
900 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNSNQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALLDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNLVSELESQIDNFEAEMEGLSVKKGKSRPPRLIHLETSITRHKA
HIMKLELILRLLDNDELSHEDVNDVREFLEDYVERNQEDFDEFSDVDDLYSSLPLDKVES
LEDLGTICPPSLVKGITALSLKTTLATTGTQVPVTVAPNHQPNTVTQDQVDDSALLDGNT
DTLLKTPPPKNSVLGSSAATTPTGNHAASTALNGAVHGSGLSATSAILPGSSSVRAVEAT
GASNSSPVNMPTSAKDEEIASFPGRKLSPSFADTGLVRGGMGRGVTANQPASSSTHTSGI
VVPSTITLGNVSSASEVTKRNILGSEERAGNSGLVQSMGSPLSNRMVLPTAAKPSDGTST
VDPSNVSDAAAIGSRVFSPVVPSMQWRPGSSFQNPNEGGQFRGRAEIAPDQREKFLQRLQ
QVQQQGHSTLLSMNLGGGNNKQFSSQQQSSLLQQFNSQNSSVSSQAGLGIGVQAPGVNVV
TSGSLQQQPSSFQQSNQQALMTSGAKESDVAPVKVEEQQQPQQQQSLPEDTTTDSAAGSV
LGKNLMSDDDLKGAYPVDTPVGVPVSLTETASVSREDDLSPGQPLQHGQPSKSLGVIGRR
SVSDLGAIGDNLGGSSLTTSGMHDQFHNLQMLEAAFYKLPQPKDSERPRSYTPRHPAVTP
PSYPQVQAPIINNPALWDRLGLETYGTDTLFFAFYYQPNTYQQYLAARELKKQSWRYHRK
YQTWFQRHEEPKIATDEYEQGTYVYFDFHFNNDDLQHGWCQRIKTEFTFEYNYLEDELNI
NT seq
2703 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcgagtcgaaagcttcaaggggagattgaccgagttcttaagaaggtccaagaa
ggggttgacgtctttgacagcatttggaacaaggtttatgataccgacaattccaatcag
aaggagaagttcgaggcggatttgaagaaggagataaagaagcttcagaggtacagggac
caaataaagacctggattcagtccagtgagattaaggacaagaaggtcagtgcctcttat
gagcaggctttgttggatgctcgtaaacttattgagcgtgaaatggaaagatttaagatt
tgtgaaaaggagacgaaaaccaaagccttctcaaaagaaggtttgggtcaacagcctaaa
actgacccaaaggagaaagctaaatcagagacacgagattggttgaacaatttggttagt
gagttggaatctcagattgataattttgaagctgagatggagggtctatctgtgaagaag
ggaaaatcaaggccacctagattgattcatctggaaacttctattactcggcacaaggct
catataatgaagctggaactaatcttgagactgcttgataatgatgaattgagtcatgag
gatgtcaacgatgtcagggagtttttagaagactatgtggaaaggaatcaggaggatttt
gatgaattcagtgatgtggatgatctttacagctcattgccactcgataaggtggaatcc
cttgaagatctgggtacaatttgccctcctagccttgtgaagggtataacagctctcagc
ttgaagactactttggcaacaacgggaactcaagtgcctgttactgttgctcctaatcat
caaccaaatactgtcactcaggatcaggttgatgattcagctttgctagatggtaacact
gatactcttttgaaaaccccacctcctaagaatagtgtccttggttcttctgctgctaca
acacctaccgggaaccatgcagcctcaactgccttgaatggtgcagtgcatgggtctggc
ttgtccgctacatcagccattcttccaggttcaagttctgttcgtgctgtggaggctacg
ggtgcttctaattcatctccggtaaatatgcccacttctgcaaaggatgaagaaattgct
agcttcccaggccgtaaattgtctccatcatttgcggatactggacttgtaaggggtggc
atgggaagaggtgtcactgctaatcaaccagcctctagttccacccatacttctggtatt
gtggttcctagcactataactcttggtaacgtttcttctgcctctgaagtcacaaagaga
aacattttgggatctgaagaacgggctggtaacagtggcttggtgcagtctatgggttct
cctttaagtaatagaatggttttgcctacagcagctaaacctagtgatggaacgagcaca
gttgatcctagcaatgttagtgatgcagcggctataggaagtcgagttttctctccagtg
gttcctagcatgcagtggaggccaggaagttcttttcaaaatccgaatgaaggagggcag
ttccgtggaagagctgaaatagcgcctgatcagagagagaagttcttgcagcgtctccag
caagttcagcaacagggtcatagtacacttcttagcatgaatcttggtggagggaacaac
aaacaattttcttcgcaacagcaaagttcacttctacagcagttcaactcccaaaattca
tctgttagttctcaagctggtctgggaattggagttcaagcaccaggagttaatgttgtt
acatctggttcattacagcagcagccaagttccttccagcagtctaatcagcaggcatta
atgacaagtggggcgaaagaatctgatgttgcccctgtaaaagttgaagagcagcagcag
ccacagcagcaacagagtttacctgaagatactactactgattctgctgctggttctgtc
cttggaaagaatctgatgagcgacgatgatttaaaaggcgcatatccagttgatactcca
gttggcgtacctgtttcattgactgagactgcttcagtgtcgagagaggatgacctttct
ccaggtcaacctttacagcatggtcaaccttctaaaagtcttggtgtcattggccgaaga
agtgtttctgacttgggtgccattggtgataacctcggtggatcctcgttgactactagc
ggaatgcatgatcagttccataatttgcaaatgcttgaggctgcattctacaagctacct
cagccaaaagactcagagcgtccgaggagctacactccaaggcaccctgcagttactcct
ccgagctatcctcaagtgcaggcacctattataaacaatcctgctttatgggaccgatta
ggtcttgagacctatggcactgacacattgttctttgcattttactatcaaccgaacacc
tatcaacaatatttggctgctagagaattaaagaagcaatcttggagatatcacagaaaa
tatcagacatggttccaaagacatgaagagccaaaaattgctacagatgaatatgagcag
ggaacttatgtgtacttcgatttccattttaataatgatgacctacaacatggatggtgc
caaaggattaaaacagagttcacttttgagtataactaccttgaagatgaactcaacata
tag
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